View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18464_low_3 (Length: 420)

Name: NF18464_low_3
Description: NF18464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18464_low_3
NF18464_low_3
[»] chr7 (8 HSPs)
chr7 (16-163)||(31271875-31272024)
chr7 (16-163)||(7505447-7505596)
chr7 (281-347)||(10993172-10993238)
chr7 (239-345)||(47381492-47381598)
chr7 (239-312)||(7505258-7505331)
chr7 (239-313)||(31272131-31272205)
chr7 (276-313)||(2621489-2621526)
chr7 (276-313)||(16526208-16526245)
[»] chr3 (5 HSPs)
chr3 (16-163)||(19976002-19976154)
chr3 (249-345)||(33982979-33983075)
chr3 (239-313)||(19975800-19975874)
chr3 (276-346)||(21389730-21389800)
chr3 (249-346)||(24310788-24310885)
[»] chr4 (8 HSPs)
chr4 (16-163)||(19240985-19241129)
chr4 (249-346)||(3415235-3415332)
chr4 (249-345)||(32767570-32767666)
chr4 (239-330)||(44341197-44341288)
chr4 (276-345)||(52464145-52464214)
chr4 (249-313)||(43286284-43286348)
chr4 (125-163)||(51204242-51204280)
chr4 (276-313)||(19240790-19240827)
[»] chr6 (6 HSPs)
chr6 (16-112)||(27966458-27966554)
chr6 (60-163)||(27966550-27966649)
chr6 (239-331)||(27966766-27966858)
chr6 (249-332)||(20139215-20139298)
chr6 (249-332)||(22193571-22193654)
chr6 (276-335)||(31472538-31472597)
[»] chr8 (3 HSPs)
chr8 (239-345)||(42739374-42739480)
chr8 (277-313)||(45451820-45451856)
chr8 (276-346)||(3940656-3940727)
[»] chr5 (4 HSPs)
chr5 (276-347)||(9996226-9996297)
chr5 (276-345)||(38976295-38976364)
chr5 (276-330)||(24477286-24477340)
chr5 (276-320)||(6453024-6453068)
[»] chr2 (4 HSPs)
chr2 (249-332)||(15614178-15614261)
chr2 (249-346)||(5271059-5271156)
chr2 (276-315)||(4564936-4564975)
chr2 (276-313)||(40861091-40861128)
[»] chr1 (1 HSPs)
chr1 (262-313)||(46237631-46237682)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 31271875 - 31272024
Alignment:
Q  16 gtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgatatatcagaggc--ttgtgt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |  ||||||    
T  31271875 gtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgctatatcagagacttttgtgt 31271974  T
Q  114 tttttctactcagcttgagtggattgaggccattaataatattagctgtt 163  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31271975 tttttctgctcagcttgagtggattgaggccattaataatattagctgtt 31272024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 7505596 - 7505447
Alignment:
Q  16 gtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgatatatcagaggc--ttgtgt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||  ||||||    
T  7505596 gtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtgcagtaagcttcttatgttagattgctactgctacatcagaggcttttgtgt 7505497  T
Q  114 tttttctactcagcttgagtggattgaggccattaataatattagctgtt 163  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  7505496 tttttctgctcagcttgagtggattgaggccattaataatattagttgtt 7505447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 10993238 - 10993172
Alignment:
Q  281 caattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaat 347  Q
    |||||||| ||| |||||||||||||||||||| | |||||  |||||||||||| |||||||||||    
T  10993238 caattattcggcccaagccctacattttattcgggctttcgggccggcccattttgacagctctaat 10993172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 345
Target Start/End: Original strand, 47381492 - 47381598
Alignment:
Q  239 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaac 338  Q
    |||| |||| |||| ||||||  |||||||||||   |||| |||||||||||| |||||||||| |||||| ||  ||||||  |||||||||||| ||    
T  47381492 ttttttgggccgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacgttttatgcggattttcgggccggcccattttgac 47381591  T
Q  339 agctcta 345  Q
    |||||||    
T  47381592 agctcta 47381598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 7505331 - 7505258
Alignment:
Q  239 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattc 312  Q
    ||||| ||| |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||||||||||||    
T  7505331 ttttacgggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacattttattc 7505258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 31272131 - 31272205
Alignment:
Q  239 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcg 313  Q
    ||||| ||| |||| ||||||  |||||||||||    |||||||||||||||| ||||||||||||||||||||    
T  31272131 ttttacgggccgggctaaaaagccctggaaaaattcgtgctgcaattattaggcccaagccctacattttattcg 31272205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 2621489 - 2621526
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcg 313  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  2621489 ggctgcaattattaggctcaaaccctacgttttattcg 2621526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 16526245 - 16526208
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcg 313  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  16526245 ggctccaattattcggctcaagccctacattttattcg 16526208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 19976154 - 19976002
Alignment:
Q  16 gtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgatatatcagaggcttgtg--- 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||       
T  19976154 gtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtgcagtaagcttcttatgttagattgctactgctatatcagaggattttgtgt 19976055  T
Q  113 --ttttttctactcagcttgagtggattgaggccattaataatattagctgtt 163  Q
      |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19976054 ttttttttctgctcagcttgagtggattgaggccattaataatattagctgtt 19976002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 345
Target Start/End: Complemental strand, 33983075 - 33982979
Alignment:
Q  249 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctcta 345  Q
    |||| ||||||  |||||||||||   |||| |||||||||||| |||||||||||||||||| | | |||||  |||||||||||| |||||||||    
T  33983075 cgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacattttatttgggctttcgggccggcccattttgacagctcta 33982979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 19975874 - 19975800
Alignment:
Q  239 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcg 313  Q
    ||||| ||| |||| ||||||  |||||||||||   ||||||||||||||| | ||||||||||||||||||||    
T  19975874 ttttacgggccgggctaaaaagccctggaaaaattcgggctgcaattattagacccaagccctacattttattcg 19975800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 346
Target Start/End: Complemental strand, 21389800 - 21389730
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaa 346  Q
    |||||| ||| |||||| ||||||||||||||| |||  | |||||| ||||||| |||| ||||||||||    
T  21389800 ggctgccatttttaggcccaagccctacatttttttcaggctttcgagccggcccgttttgacagctctaa 21389730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 346
Target Start/End: Complemental strand, 24310885 - 24310788
Alignment:
Q  249 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaa 346  Q
    |||| |||||||||||  ||||||   |||||||||| |||||   || |||||| ||||||||| |||||||  ||||||| |||| ||||||||||    
T  24310885 cgggctaaaaaatcctaaaaaaattcgggctgcaatttttaggtctaaaccctacgttttattcgggttttcgggccggcccgttttgacagctctaa 24310788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 19241129 - 19240985
Alignment:
Q  16 gtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgatatatcagaggc--ttgtgt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||     ||  ||||||  ||||||    
T  19241129 gtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtgcagtaagcttcttatgttagattgttac-----tactagaggcttttgtgt 19241035  T
Q  114 tttttctactcagcttgagtggattgaggccattaataatattagctgtt 163  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  19241034 tttttctgctcagtttgagtggattgaggccattaataatattagttgtt 19240985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 346
Target Start/End: Original strand, 3415235 - 3415332
Alignment:
Q  249 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaa 346  Q
    |||| ||||||  |||||||||||   |||| |||||||||||| |||||||||| ||||||||| | |||||  |||||||||||| ||||||||||    
T  3415235 cgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacgttttattcgggctttcgggccggcccattttgacagctctaa 3415332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 345
Target Start/End: Complemental strand, 32767666 - 32767570
Alignment:
Q  249 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctcta 345  Q
    |||| ||||||  |||||||||||   ||||||||||||||||| ||||||||| |||||||||| | |||||  ||||||| |||| |||||||||    
T  32767666 cgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctatattttattcgggctttcgggccggcccgttttgacagctcta 32767570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 330
Target Start/End: Complemental strand, 44341288 - 44341197
Alignment:
Q  239 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggccc 330  Q
    ||||| ||| |||| ||||||  ||||||| ||||  | ||||||||||| ||| |||||||||||||||||||| | ||||| ||||||||    
T  44341288 ttttacgggccgggctaaaaagccctggaagaatccggactgcaattattcggcccaagccctacattttattcgggctttcggaccggccc 44341197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 52464145 - 52464214
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctcta 345  Q
    ||||| ||||||||||| |||||||||| ||||||||| | |||||  ||||||| |||| |||||||||    
T  52464145 ggctgtaattattaggcccaagccctacgttttattcgggctttcgggccggcccgttttgacagctcta 52464214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 43286284 - 43286348
Alignment:
Q  249 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcg 313  Q
    |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||| |||||||||    
T  43286284 cgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcg 43286348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 51204242 - 51204280
Alignment:
Q  125 agcttgagtggattgaggccattaataatattagctgtt 163  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  51204242 agcttgagtagattgaggccattaataatattcgctgtt 51204280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 19240827 - 19240790
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcg 313  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  19240827 ggctgcaattattaggcccaaaccctacattttattcg 19240790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 27966458 - 27966554
Alignment:
Q  16 gtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgatatatcagaggcttgtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||||||||| ||||    
T  27966458 gtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtgcactaagcttcttatgttagattgctattgctatatcagaggcatgtg 27966554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 27966550 - 27966649
Alignment:
Q  60 atgtggagtaagcttcttatgttagattgctactgatatatcagaggcttgtgttttttctactcagcttgagtggattgaggccattaataatattagc 159  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |    | |||||||||||||||||||||||||||||||||||||     
T  27966550 atgtgcagtaagcttcttatgttagattgctactgctatatcagaggcttttgtgt----tgctcagcttgagtggattgaggccattaataatattagt 27966645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 27966766 - 27966858
Alignment:
Q  239 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggccca 331  Q
    ||||||||| |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||||||||| ||| | |||||  ||||||||    
T  27966766 ttttatgggccgggctaaaaagccctggaaaaatttgggctgcaattattaggcccaagccctacattttactcgggctttcgggccggccca 27966858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 20139298 - 20139215
Alignment:
Q  249 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccat 332  Q
    |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||| ||||||||| | |||||  |||||||||    
T  20139298 cgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccat 20139215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 22193571 - 22193654
Alignment:
Q  249 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccat 332  Q
    |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||| ||||||||| | |||||  |||||||||    
T  22193571 cgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccat 22193654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 31472538 - 31472597
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccatttt 335  Q
    ||||||||||||||||| |||||||||| ||||||||| | |||||  ||||||| ||||    
T  31472538 ggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccgtttt 31472597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 345
Target Start/End: Original strand, 42739374 - 42739480
Alignment:
Q  239 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaac 338  Q
    |||| |||| |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||| ||||||||| | |||||  ||||||| |||| ||    
T  42739374 ttttttgggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccgttttgac 42739473  T
Q  339 agctcta 345  Q
    |||||||    
T  42739474 agctcta 42739480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 45451820 - 45451856
Alignment:
Q  277 gctgcaattattaggctcaagccctacattttattcg 313  Q
    |||||||||||| ||||||||||||||||||||||||    
T  45451820 gctgcaattattcggctcaagccctacattttattcg 45451856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 346
Target Start/End: Complemental strand, 3940727 - 3940656
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcgagttttc-gaaccggcccattttaacagctctaa 346  Q
    |||| |||||||| ||| |||||||||||||||||||| | |||| |  |||||||||||| ||||||||||    
T  3940727 ggctccaattattcggcccaagccctacattttattcgggctttcggggccggcccattttgacagctctaa 3940656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 9996297 - 9996226
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaat 347  Q
    |||| |||||||| ||| |||||||||||||||||||| | |||||  |||||||||||| |||||||||||    
T  9996297 ggctccaattattcggcccaagccctacattttattcgggctttcggcccggcccattttgacagctctaat 9996226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 38976295 - 38976364
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctcta 345  Q
    ||||||||||||||||| |||||||||| ||||||||| | |||||  ||||||| |||| |||||||||    
T  38976295 ggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccgttttgacagctcta 38976364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 24477340 - 24477286
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggccc 330  Q
    |||| |||||||| |||||||||||||||||||||||| | |||||  |||||||    
T  24477340 ggctccaattattcggctcaagccctacattttattcgggctttcgggccggccc 24477286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 6453068 - 6453024
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcgagttttc 320  Q
    ||||||||||||| ||| ||| |||||||||||||||||| ||||    
T  6453068 ggctgcaattattcggcacaaaccctacattttattcgagctttc 6453024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 15614178 - 15614261
Alignment:
Q  249 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccat 332  Q
    |||| ||||||  |||||||||||   ||||||||||||||||| ||||||||| |||||||||| | |||||  |||||||||    
T  15614178 cgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctatattttattcgggctttcgggccggcccat 15614261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 346
Target Start/End: Complemental strand, 5271156 - 5271059
Alignment:
Q  249 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaa 346  Q
    |||| |||||| ||||||||||||   |||| ||||| || ||| |||||||| ||||||||||| | |||||  ||||||| |||| ||||||||||    
T  5271156 cgggctaaaaagtcctggaaaaattcgggctccaatttttcggcccaagccctgcattttattcgggctttcgggccggcccgttttgacagctctaa 5271059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 4564975 - 4564936
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcgag 315  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  4564975 ggctgcaatttttaggcacaagccctacattttattcgag 4564936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 40861091 - 40861128
Alignment:
Q  276 ggctgcaattattaggctcaagccctacattttattcg 313  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  40861091 ggctccaattattcggctcaagccctacattttattcg 40861128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 46237631 - 46237682
Alignment:
Q  262 cctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcg 313  Q
    |||||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  46237631 cctggaaaaattcgggctgcaattattaggcccaagccctatattttattcg 46237682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University