View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18464_low_5 (Length: 402)
Name: NF18464_low_5
Description: NF18464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18464_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 4803830 - 4804215
Alignment:
| Q |
1 |
gtatcaaaatttgaatcgctttttcgccttccgatgcttctctacctccaatgagaactcagtctggattgaaatatacaaacacaatgtcagctttata |
100 |
Q |
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| T |
4803830 |
gtatcaaaatttgaatcgctttttcgccttccgatgcttctctacctccaatgagaactcagtctggattgaaatatacaaacacaatgtcagcttcata |
4803929 |
T |
|
| Q |
101 |
gacatgtttttcaacatcaatgttggagtcaaggtacttgcatcgacattgctttactacatcatcaatacctggctcatagataggaagttgattgcta |
200 |
Q |
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| T |
4803930 |
gacatgtttttcaacatcagtgttgaagacaaggtacttgcatcgacattgctttactacatcatcaatacctggctcatagataggaagttgattgcta |
4804029 |
T |
|
| Q |
201 |
ttcaaggctgcaatgcacgatttcgagatatatatcaaggctgcattgctctatcaacgacagctgcttgaatggatggacatctaaatacaatgactgt |
300 |
Q |
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| T |
4804030 |
ttcaaggctgcaatgcacgatttcgagatatatatcaaggctgcattgctctatcaacgacagctgcttgaatggatggacatctaaatacaatgactgt |
4804129 |
T |
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| Q |
301 |
tattgttggactcccatacatatctagcatcaatgcagaaaatcttcaccattctttctttccaaagctatccacactggtgttca |
386 |
Q |
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| T |
4804130 |
tattattggactcccttacatatctagtatcaatgcagcaaatcttcaccattctttctttcctaacctatccacactggtgttca |
4804215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 10779297 - 10779451
Alignment:
| Q |
76 |
atacaaacacaatgtcagctttatagacatgtttttcaacatcaatgttggagtcaaggtacttgcatcgacattgctttactacatcatcaatacctgg |
175 |
Q |
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| T |
10779297 |
atacaaacacaattttagcttcatagacatgtttttcaacatcagtgctgaagaaaaggt-cttgctgcgacattactttactacataatcaagattttg |
10779395 |
T |
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| Q |
176 |
ctcatagataggaagttgattgctattcaaggctgcaatgcacgatttcgagatat |
231 |
Q |
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| T |
10779396 |
ctcatagataggaagttgattgttgttccacactgcaatgcgcgatttcgagatat |
10779451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 4798068 - 4797949
Alignment:
| Q |
76 |
atacaaacacaatgtcagctttatagacatgtttttcaacatcaatgttggagtcaaggtacttgcatcgacattgctttactacatcatcaatacctgg |
175 |
Q |
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|||||||||| ||||||||| || ||||||||||| ||||||| || || || ||||| ||||| ||| ||||||||||||||||||||| |||||| |
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| T |
4798068 |
atacaaacactgtgtcagcttcatggacatgttttttaacatcagtgctgaagaaaaggttcttgccgcgatattgctttactacatcatcaagacctgg |
4797969 |
T |
|
| Q |
176 |
ctcatagataggaagttgat |
195 |
Q |
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|||||||| | |||||||| |
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| T |
4797968 |
ttcatagatggcaagttgat |
4797949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 4819525 - 4819657
Alignment:
| Q |
99 |
tagacatgtttttcaacatcaatgttggagtcaaggtacttgcatcgacattgctttactacatcatcaatacctggctcatagataggaagttgattgc |
198 |
Q |
| |
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||||||||||||||||| | |||| || || || | ||||| ||||||||||||||||||||||||| ||| | |||||||||||||| ||||||| |
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| T |
4819525 |
tagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttactacatcatcaagaccggactcatagataggaacttgattgt |
4819624 |
T |
|
| Q |
199 |
tattcaaggctgcaatgcacgatttcgagatat |
231 |
Q |
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| | | | ||||||| | |||||||||||||| |
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| T |
4819625 |
tgtgccacactgcaatacgcgatttcgagatat |
4819657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 4835666 - 4835756
Alignment:
| Q |
76 |
atacaaacacaatgtcagctttatagacatgtttttcaacatcaatgttggagtcaaggtacttgcatcgacattgctttactacatcatca |
167 |
Q |
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| T |
4835666 |
atacaaacactatgtcagctgtata-acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatca |
4835756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 4806919 - 4806977
Alignment:
| Q |
16 |
tcgctttttcgccttccgatgcttctctacctccaatgagaactcagtctggattgaaa |
74 |
Q |
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| T |
4806919 |
tcgctttttcaccttccggggcttctctatctccaacgagaactcagtctagattgaaa |
4806977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 4824480 - 4824531
Alignment:
| Q |
144 |
cgacattgctttactacatcatcaatacctggctcatagataggaagttgat |
195 |
Q |
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| T |
4824480 |
cgacattgctttactaaaccatcaaaacctggctgatagataggaatttgat |
4824531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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