View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18464_low_8 (Length: 345)
Name: NF18464_low_8
Description: NF18464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18464_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 140 - 331
Target Start/End: Complemental strand, 43655158 - 43654967
Alignment:
| Q |
140 |
aagaaataatgatgcaatgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagtcgtcaaaatcattccaccatgtgatcct |
239 |
Q |
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| T |
43655158 |
aagaaatagttatgtagtgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagccgtcaaaatcattccaccatgtgatcct |
43655059 |
T |
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| Q |
240 |
gtaaaattctttggatgggcattcgataaatgcatctaacttgatgcatatccactttgacaatgctaaaagttgaattgttagaagaatgt |
331 |
Q |
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| T |
43655058 |
gtaaaattctttggatgggcattcgataagtgcatctaatttgatgcatatccactttgacaatgctaaaagttgaattgttagaagaatgt |
43654967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 43655197 - 43655155
Alignment:
| Q |
5 |
tagtaaatctttatcacagtatacaaacttcacaccataaaga |
47 |
Q |
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| T |
43655197 |
tagtaaatcttcatcacagtatacaaacttcacaccataaaga |
43655155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 43654315 - 43654279
Alignment:
| Q |
259 |
cattcgataaatgcatctaacttgatgcatatccact |
295 |
Q |
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| T |
43654315 |
cattcgataagtgcatctaatttgatgcatatccact |
43654279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 140 - 331
Target Start/End: Complemental strand, 8364119 - 8363928
Alignment:
| Q |
140 |
aagaaataatgatgcaatgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagtcgtcaaaatcattccaccatgtgatcct |
239 |
Q |
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| T |
8364119 |
aagaaatagttatgtagtgcattatcttccgaattaatatactcctatgcaacagaactcattaagttcagccgtcaaaatcattccaccatgtgatcct |
8364020 |
T |
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| Q |
240 |
gtaaaattctttggatgggcattcgataaatgcatctaacttgatgcatatccactttgacaatgctaaaagttgaattgttagaagaatgt |
331 |
Q |
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| T |
8364019 |
gtaaatttttttggatgggcattcgataagtgcatctaatttgatgcatatccactttgacaatactaaaagttgaattgttagaagaatgt |
8363928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 8364156 - 8364116
Alignment:
| Q |
7 |
gtaaatctttatcacagtatacaaacttcacaccataaaga |
47 |
Q |
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| T |
8364156 |
gtaaatctttatcatagtatacaaacttcacaccataaaga |
8364116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 135
Target Start/End: Original strand, 2532077 - 2532106
Alignment:
| Q |
106 |
acatatattatagggtgaaaaacactatta |
135 |
Q |
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| T |
2532077 |
acatatattatagggtgaaaaacactatta |
2532106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 140 - 331
Target Start/End: Original strand, 32404453 - 32404645
Alignment:
| Q |
140 |
aagaaataatgatgcaatgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagtcgtcaaaatcattccaccatgtgatcct |
239 |
Q |
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|||||||| | ||| | |||||||||||| |||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
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| T |
32404453 |
aagaaatagttatgtagtgcattatcttctgaattaatatactcctatgcaagagaactcattaagttcagccatcaaaatcattccaccatgtgatcct |
32404552 |
T |
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| Q |
240 |
gtaaaattctttggatgggcattcgataaatgcatctaa-cttgatgcatatccactttgacaatgctaaaagttgaattgttagaagaatgt |
331 |
Q |
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||| || |||||| || |||||||||||| ||||||||| |||||||| | |||||| || |||| ||| |||||||||||||||||||||| |
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| T |
32404553 |
gtacaactctttgaataggcattcgataagtgcatctaattttgatgcaaacccacttagaaaatgttaacagttgaattgttagaagaatgt |
32404645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 32404417 - 32404456
Alignment:
| Q |
7 |
gtaaatctttatcacagtatacaaacttcacaccataaaga |
47 |
Q |
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| T |
32404417 |
gtaaatctttatcata-tatacaaacttcacaccataaaga |
32404456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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