View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_high_12 (Length: 367)
Name: NF18465_high_12
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 38930928 - 38930584
Alignment:
| Q |
18 |
tcaatgataggttctactgg-catcaacctgaggttacaacaaccgatgtaatgaatttgaaacaagagggatgaatcagctacgaacttcatcgaaagg |
116 |
Q |
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| T |
38930928 |
tcaatgataggttctactgggcatcaacctgaggttacaacaaccgatgtaatgaatttgaaacaagagggatgaatcagctacgaacttcatcgaaagg |
38930829 |
T |
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| Q |
117 |
ttccgaaggacggccggaaaatgttcataccaatttcgtaatgtgaatatacatcaattgagttaaactccatatggaaatatataaaataatgtacttt |
216 |
Q |
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| T |
38930828 |
ttcagaaggacggctggaaaatgttcataccaatttcgtaatgtgaatatacattaattgagttaaactccatatggaaatatataaaataatgtacttt |
38930729 |
T |
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| Q |
217 |
tagagtctcataacaatgatctataaatgtttgatagaattaaaataccatagattgtgtcataagattgtgcaacttgttggctatatacgattcatgc |
316 |
Q |
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| T |
38930728 |
tagagtctcataacaatgatctataaatgtttgatagaattaaaataccatagattgtgtcataagattgtgcaacttgttggctatatacgattcatgc |
38930629 |
T |
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| Q |
317 |
ttgcatgaaattattcttgaagtaaatatgactatattcatctca |
361 |
Q |
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| T |
38930628 |
ttgcatgaaattattcttgaagtaaataagactatattcatctca |
38930584 |
T |
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