View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_high_13 (Length: 354)
Name: NF18465_high_13
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 49589168 - 49589501
Alignment:
| Q |
8 |
ccaagaaaattgcagtctacctcctactaaactcgccaaaaccacagcgcaaaacaattattaggagaaatatataactaacattaccttaaaatttgat |
107 |
Q |
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| T |
49589168 |
ccaacaaaattgcagtctacctcctactacactcgccaaaaccacagcgcaaaacaattattaggagaaatatataactaacattaccttaaaatttgat |
49589267 |
T |
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| Q |
108 |
tctagtattaagaaagtttaattttacaaatagattaatttttatgggac--atgatgtaattatttatttatttactcggagtagttgttgaaactcga |
205 |
Q |
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| T |
49589268 |
tgtagtattaagaaagtttaattttacaaatagattaatttttatgggacggatgatgtaattatttatttatttactcggagtagttgttgaaactcga |
49589367 |
T |
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| Q |
206 |
aagagatagttcatttttgtcatcttcgaaattgtgtctcttggtgtacatgtatatatagcattcaacggtggaagatgttacaagcaagcactcgata |
305 |
Q |
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| T |
49589368 |
aagagatagttcatttttgtcatcttcgaaattgtgtctcttggtgtacatgtatatatagcattcaaaggtggaagatgttacaagcaagcactcgata |
49589467 |
T |
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| Q |
306 |
tttgaaaatgaacttgtttgtccacctactatgt |
339 |
Q |
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| T |
49589468 |
tttgaaaatgaacttgtttgtccacctactatgt |
49589501 |
T |
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