View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_high_16 (Length: 322)
Name: NF18465_high_16
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 35932787 - 35933091
Alignment:
| Q |
18 |
gaacttagtaggaaaacagtggtagttataatctagttataaataaactcaaatgcacatatgaaaaaatgatataaactactgaagaaacgatgtaaac |
117 |
Q |
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| T |
35932787 |
gaacttagtaggaaaacagtggtagttataatctagttataaataaactcaaatgcacatatgaaaaaacgatataaactactgaagaaacgatgtaaac |
35932886 |
T |
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| Q |
118 |
gcagatagattggtggttacaaaacaattttactttgataatactagcttatatgctataagttatcggttggccttgccaaacagaatataagagaagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35932887 |
gcagatagattggtggttacaaaacaattttactttgataatactagcttatatgctataagttatcggttggccttgccaaacagaatataagagaagt |
35932986 |
T |
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| Q |
218 |
ggaaaaactaaatttcttacaaatttcccttgagaaatataaagatgcaataagtatatggtggcagtaacttatgggaaccatatcaaacaattgagct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35932987 |
ggaaaaactaaatttcttacaaatttcccttgagaaatataaagatgtaataagtatatggtggcagtaacttatgggaaccatagcaaacaattgagct |
35933086 |
T |
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| Q |
318 |
ttctt |
322 |
Q |
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||||| |
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| T |
35933087 |
ttctt |
35933091 |
T |
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