View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_high_17 (Length: 315)
Name: NF18465_high_17
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 17826685 - 17826975
Alignment:
| Q |
9 |
agcagagagcttagcaacgaacacattaccccctcccaagttctctacaaaacaagccaagaagaccgagtttgagtttctgaaaatgcccctatatgca |
108 |
Q |
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| T |
17826685 |
agcagagagctcagcaacgaacgcattaccccctcccaagttctctgcaaaacaagccaagaagatcgagtttgagtttctgaaaatgcccccacatgca |
17826784 |
T |
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| Q |
109 |
gatgtattaagagtagaggagccgtcagtgttgcacttgatccaggcattaataggaggagaccatattacttctttaataataggagctttgggaggtt |
208 |
Q |
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| T |
17826785 |
gatgtattaagagtagaggagccgtcattgttgcacttgatccaggcattaataggaggagaccatatgacttctttaataataggagctttgggaggtt |
17826884 |
T |
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| Q |
209 |
taatcttgatgttgaacttcttcaagattatgaagtctctgacagatgcggtagatgctttgtaagtattattcctagacaaagctactga |
299 |
Q |
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| T |
17826885 |
taatcttgatgttgaactttttcaagattatgaagtctctgacagatgaggtagatcttttggaagtattattcccagacaaagctactga |
17826975 |
T |
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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 23921576 - 23921650
Alignment:
| Q |
9 |
agcagagagcttagcaacgaacacattaccccctcccaagttctctacaaaacaagccaagaagaccgagtttga |
83 |
Q |
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|||||| |||| ||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
23921576 |
agcagatagctctgcaacgaacgcattacccactcccaagttctctgcaaaacaagacaagaagaccgagtttga |
23921650 |
T |
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