View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_high_24 (Length: 247)
Name: NF18465_high_24
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_high_24 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 27070194 - 27070440
Alignment:
| Q |
1 |
ctagctggtatgcttttttagttatgatgagttgttgcttctgtgttattttccctttagcagcaactatttttgggttataaagcttatgttttttgct |
100 |
Q |
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| T |
27070194 |
ctagctggtgtgcttttgtagttaggatgtgttgttgcttctgtgttattttccctttagcagcaactatttttgggttattaagcttatgttttttgct |
27070293 |
T |
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| Q |
101 |
ttgttatgggcggttatgatagctgtttgttttagtgttcatgtgtactctttcaacatatgtgccttacatttgtaatcaccttcattgttgcaataag |
200 |
Q |
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| T |
27070294 |
ttgttatgggcggttatgatagctgtttgttttagtgttcatgtgtactctttcaacatatttgctttacatttgtaatcaccttcattgttgcaataag |
27070393 |
T |
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| Q |
201 |
cttcaaatttgtaataagcagctctaattatttgtagcaaaattgat |
247 |
Q |
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| T |
27070394 |
cttcaaatttgtaataagcagttctaattatttgtagcaaaattgat |
27070440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 27150280 - 27150526
Alignment:
| Q |
1 |
ctagctggtatgcttttttagttatgatgagttgttgcttctgtgttattttccctttagcagcaactatttttgggttataaagcttatgttttttgct |
100 |
Q |
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||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27150280 |
ctagctggtgtgcttttgtagttaggatgtgttgttgcttctgtgttattttccctttagcagcaactatttttgggttattaagcttatgttttttgct |
27150379 |
T |
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| Q |
101 |
ttgttatgggcggttatgatagctgtttgttttagtgttcatgtgtactctttcaacatatgtgccttacatttgtaatcaccttcattgttgcaataag |
200 |
Q |
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| T |
27150380 |
ttgttatgggcggttatgatagctgtttgttttagtgttcatgtgtactctttcaacatatttgctttacatttgtaatcaccttcattgttgcaataag |
27150479 |
T |
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| Q |
201 |
cttcaaatttgtaataagcagctctaattatttgtagcaaaattgat |
247 |
Q |
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| T |
27150480 |
cttcaaatttgtaataagcagttctaattatttgtagcaaaattgat |
27150526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 150
Target Start/End: Complemental strand, 15046913 - 15046794
Alignment:
| Q |
31 |
gttgttgcttctgtgttattttccctttagcagcaactatttttgggttataaagcttatgttttttgctttgttatgggcggttatgatagctgtttgt |
130 |
Q |
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|||| |||||| ||||| ||| ||||||||||||||| | ||||| |||||||||| ||||||| ||||||||||||| |||| || ||| || |||| |
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| T |
15046913 |
gttgctgcttcagtgttttttaccctttagcagcaaccaaatttggaatataaagcttctgtttttagctttgttatgggtggttttggtaggtggttgt |
15046814 |
T |
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| Q |
131 |
tttagtgttcatgtgtactc |
150 |
Q |
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| T |
15046813 |
attagtgttcatgtgtactc |
15046794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 20786467 - 20786353
Alignment:
| Q |
36 |
tgcttctgtgttattttccctttagcagcaactatttttgggttataaagcttatgttttttgctttgttatgggcggttatgatagctgtttgttttag |
135 |
Q |
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| T |
20786467 |
tgcttcagtgttttttaccctttagcagcaaccaaatttggaatataaagcttctgattttagctttgttatgggtggttttggtaggtgtttgtattag |
20786368 |
T |
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| Q |
136 |
tgttcatgtgtactc |
150 |
Q |
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| T |
20786367 |
tgttcatgtgtactc |
20786353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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