View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_high_3 (Length: 554)
Name: NF18465_high_3
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 17 - 552
Target Start/End: Complemental strand, 39109146 - 39108611
Alignment:
| Q |
17 |
aagttagtagtaaatttannnnnnnacctccaatatccttcattgtcataacttttacagagaccagccatgacacgttttttcaaatcagaaacagaga |
116 |
Q |
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| T |
39109146 |
aagttagtagtaaatttatttttttacctccaatatccttcattgtcataacttttacagagaccagccatgacacgttttttcaaatcagaaacagaga |
39109047 |
T |
|
| Q |
117 |
aacacttgaagtagctctgatctggagcagaggaatccgatgaagaaagtaacttcacaccttctcttgaaagctgttgagaagaaccatcagaagaaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39109046 |
aacacttgaagtagctctgatctggagcagaggaatccgatgaagaaagtaacttcacaccttctcttgaaagctgttgagaagaaccatcagaagaaga |
39108947 |
T |
|
| Q |
217 |
agaaacagagccagaatcatcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagcaaagat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39108946 |
agaaacagagccagaatcatcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagcaaagat |
39108847 |
T |
|
| Q |
317 |
cttgctttcatctctagggcttgatctgaacttggagaaatagctaaagctgagtctagaagacttatagctgaaacaatctcgtttcgttcttgtgttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39108846 |
cttgctttcatctctagggcttgatctgaacttggagaaatagctaaagctgagtctagaagacttatagctgaaacaatctcgtttcgttcttgtgttg |
39108747 |
T |
|
| Q |
417 |
caatgagtgttcttgcatctttgatatatttctcaacaatctatnnnnnnnnnnnnnnnnntattcagacatgttttgagaatgaaaaaacaaaacaaga |
516 |
Q |
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| T |
39108746 |
caatgagtgttcttgcatctttgatatatttctcaacaatctataaaacaaaaacaaaaaatattcagacatgttttgagaatgaaaaaacaaaacaaga |
39108647 |
T |
|
| Q |
517 |
atttaaggtgaaatatttagaggtttactttacggt |
552 |
Q |
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| T |
39108646 |
atttaaggtgaaatatttagaggtttaccttacggt |
39108611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 458
Target Start/End: Original strand, 44707989 - 44708239
Alignment:
| Q |
208 |
agaagaagaagaaacagagccagaatcatcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatag |
307 |
Q |
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||||||||||||| ||||| || ||| ||||||| |||| ||||||| ||||| || ||||||||||||| || || |||||||||||||| | || |
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| T |
44707989 |
agaagaagaagaaccagaggaaggatcttcattagtcattctcaaactcggaatgtagtcttgaagcatatcagcaacatctttgaatcttcttaggtaa |
44708088 |
T |
|
| Q |
308 |
agcaaagatcttgctttcatctctagggcttgatctgaacttggagaaatagctaaagctgagtctagaagacttatagctgaaacaatctcgtttcgtt |
407 |
Q |
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| T |
44708089 |
agcaatgacctagctcttagctcaagagcttgatccaaacgcggtgatatagctaaagctgcgtcgagaagattcaaagctgaaaggatctcgctctgtt |
44708188 |
T |
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| Q |
408 |
cttgtgttgcaatgagtgttcttgcatctttgatatatttctcaacaatct |
458 |
Q |
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| T |
44708189 |
cttgtgttgctattaagcttcgtgcgtcttttatgtatttctccacaatct |
44708239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 47057730 - 47057663
Alignment:
| Q |
235 |
atcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctca |
302 |
Q |
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| T |
47057730 |
atcatttgccattttcaaattaggaatatagtcttgaagcatatctgcaacatccttgaaccttctca |
47057663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 13720336 - 13720402
Alignment:
| Q |
247 |
tttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagcaaa |
313 |
Q |
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||||| || ||| |||| ||| ||||||||||||| ||| |||| ||| |||||||||||||||||| |
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| T |
13720336 |
tttcatacatggtatatcatcctgaagcatatttgttacatcttcgaaccttctcaaatagagcaaa |
13720402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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