View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_high_5 (Length: 483)
Name: NF18465_high_5
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 421
Target Start/End: Complemental strand, 44735033 - 44734619
Alignment:
| Q |
8 |
gacatcatcaatctctaacgcccaatttgttatgcaaattttctgaaacaaccaccactnnnnnnn-cttaacggatctcactggccnnnnnnnttgtaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |||||| |
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| T |
44735033 |
gacaacatcaatctctaacgcccaatttgttaggcaaattttctgaaacaaccaccactaaaaaaaacataacggatctcactggccaaaaaaattgtaa |
44734934 |
T |
|
| Q |
107 |
ttagtctctattcaaaaacaattttgtaatcagttctatgctccggctagcatgcacatggtgtactgtgcctacattctannnnnnnagttaaaggact |
206 |
Q |
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| T |
44734933 |
ttagtctctattcaaaaacaattttgtaatcagttctatgctccggctagcatgcacatggtgtactgtgcctacattctatttttatagttaaaggact |
44734834 |
T |
|
| Q |
207 |
ttttagcggttaaaatcacaagttaatccctgttctgtttctcaagaaaggactcaagttggtcaatcataattctctcacggattaatttaatctaata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44734833 |
ttttagcggttaaaatcacaagttaatccctgttctgtttctcaagaaaggactcaagttggtcaatcataattctctcacggattaatttaatctaata |
44734734 |
T |
|
| Q |
307 |
agaaataatatccaaattagtccataacattattattcagggggcaaattagtcacggctcaatataacaaagactaatatgtccccaatttaaaaatgt |
406 |
Q |
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| T |
44734733 |
aaaaataatatccaaattagtccataacatttttattcagaggacaaattagtcacggctcaatataacaaagactaatctgtccccaatttaaaaatgt |
44734634 |
T |
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| Q |
407 |
cagggactagcttga |
421 |
Q |
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|||||||| |||||| |
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| T |
44734633 |
cagggactggcttga |
44734619 |
T |
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