View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_high_6 (Length: 465)
Name: NF18465_high_6
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 14988933 - 14988673
Alignment:
| Q |
4 |
atgtcgaagaaaatcaccatgtacctaaattttgtgaaagttacattttacacttnnnnnnnttacagtggccccgtaattttgttacacccaccgaaaa |
103 |
Q |
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| T |
14988933 |
atgtagaagaaaatcaccatgtacctaaattttgtgaaagttacattttacacttaaaaaaattacagtggccccataattttgttacacccaccgaaaa |
14988834 |
T |
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| Q |
104 |
cacaaacttaatttatatacaccgtcgatgtaacttttgttttcttatatgtttaatcaatcataattaattattaaaaacgtttgattttaatcataac |
203 |
Q |
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| T |
14988833 |
cacaaacttaatttatatacaccgtcgatgtaacttttgttttcatatatgttaaatcaatcataattaattattaaaaacgtttgattttaatcataac |
14988734 |
T |
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| Q |
204 |
taattttgtaatatgtttttacaatgtcattgtagcaaaattaaacttttttacgaaatgc |
264 |
Q |
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| T |
14988733 |
tagtgttgtgatatgtttttacaatgtcactgtagcaaaattaaacttttttacgaaatgc |
14988673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 332 - 448
Target Start/End: Complemental strand, 14988673 - 14988557
Alignment:
| Q |
332 |
caggtaagagaagagattgaacacttgatggatgatgatgaagacatggctgacctatatttaacaagaaagttgataggattatcatcacctataagta |
431 |
Q |
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| T |
14988673 |
caggtaagagaagagattgaacacttgatggatgatgatgaagacatggctgacctatatttaacaagaaagttgataggattatcatcacctataagta |
14988574 |
T |
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| Q |
432 |
aatcaggtgctgaaaat |
448 |
Q |
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| T |
14988573 |
aatcaggtgctgaaaat |
14988557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 441
Target Start/End: Complemental strand, 14977986 - 14977866
Alignment:
| Q |
321 |
cttatataatacaggtaagagaagagattgaacacttgatggatgatgatgaagacatggctgacctatatttaacaagaaagttgataggattatcatc |
420 |
Q |
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| T |
14977986 |
cttatctaatataggtaagagatgagattgaacacttaatggatgacaatgaagacatggctggcttatacttatcaagaaagttggtagctgcatcatc |
14977887 |
T |
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| Q |
421 |
acctataagtaaatcaggtgc |
441 |
Q |
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| T |
14977886 |
acctataagtgaatcaggtgc |
14977866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 393
Target Start/End: Complemental strand, 33808426 - 33808363
Alignment:
| Q |
330 |
tacaggtaagagaagagattgaacacttgatggatgatgatgaagacatggctgacctatattt |
393 |
Q |
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| T |
33808426 |
tacaggtcagagatgagcttgaacaattgctggatgatgatgatgatatggctgacctatattt |
33808363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 393
Target Start/End: Complemental strand, 33867895 - 33867832
Alignment:
| Q |
330 |
tacaggtaagagaagagattgaacacttgatggatgatgatgaagacatggctgacctatattt |
393 |
Q |
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| T |
33867895 |
tacaggtcagagatgagcttgaacaattgctggatgatgatgatgatatggctgacctatattt |
33867832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 38572974 - 38573018
Alignment:
| Q |
362 |
gatgatgatgaagacatggctgacctatatttaacaagaaagttg |
406 |
Q |
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| T |
38572974 |
gatgatgatgatgacatggctgaactttatttatcaagaaagttg |
38573018 |
T |
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