View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_low_1 (Length: 860)
Name: NF18465_low_1
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 167 - 589
Target Start/End: Original strand, 20801324 - 20801738
Alignment:
| Q |
167 |
gactgaatcaaaaacagatcttaatattagattcaattcaacctccaccacttttgttaattgcattactctctttcccgctgcaaatcatccttgtaag |
266 |
Q |
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| T |
20801324 |
gactgaatcaaaaacagatcttaatattagattcaattcaacctccaccacttttgttaattgcattactctctttcccgccgcaaatcatccttgtaag |
20801423 |
T |
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| Q |
267 |
gaaaataatcacaagcttttgagttttccttttaaagattcaacactactgccaactatacctcatcctgcattccaaaaataaatgattaacataagga |
366 |
Q |
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| T |
20801424 |
gaaaataatcacaagctttcgagttttccttttaaagattcaacactactgccaactatacctcatcctgcattccaaaaataaatgattaacataagga |
20801523 |
T |
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| Q |
367 |
ataataatccacattaacaaattattattacnnnnnnngtttaattcatatactaaactaaaaattatg-nnnnnnnnntcataaaatttccattccaaa |
465 |
Q |
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| T |
20801524 |
ataataatccacattaacaaattattattactttttttgtttaattcatatactaaactaaaaattatgaaaaaaaaaatcataaaatttccattccaaa |
20801623 |
T |
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| Q |
466 |
tttcaacctcagattccacaatccagttttagaaaatcacagccattaggctcatcgtggtgaagttcttcatttcgaatccatgaaaatgaattccaat |
565 |
Q |
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| T |
20801624 |
tttcaacctcagattccacaatccagttttagaaaatcacagccattaggctcatcgtggtgaagttcttcatttcgaatccatg---------tccaat |
20801714 |
T |
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| Q |
566 |
aatcatttctcaccatttcactca |
589 |
Q |
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| T |
20801715 |
aatcatttctcaccatttcactca |
20801738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 656 - 843
Target Start/End: Original strand, 20801805 - 20801980
Alignment:
| Q |
656 |
taagattatgaatccagagagttcaaattcacattgtagaacagaaagagaagaatgcaagtttttaagcgagcgcgcgtgtaaaggaatatgaatcgta |
755 |
Q |
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| T |
20801805 |
taagattatgaattcagagagttcaaattcacattgtagaacagaaagagaagaatgcaagtttttaagcgagcgcgcgtgtaaaggaatatgaatcgta |
20801904 |
T |
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| Q |
756 |
acgtgaaagtgtaaaatgaagaatgaaaaggaacgtaccacagtgaagagtttgtatttgaagtaaagaaaacgtaaccctagaagtg |
843 |
Q |
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| T |
20801905 |
acgtgaaagtgta------------aaaaggaacgtaccacagtgaagagtttgtatttgaagtaaagaaaacgtaaccctagaagtg |
20801980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 20801167 - 20801258
Alignment:
| Q |
10 |
gagcacagacacactatgcaaaccagcaatcgccatttcaatatttcacttcactaccaaacacacagatctcttcaacccatatatggatt |
101 |
Q |
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| T |
20801167 |
gagcacagacacactatgcaaaccagcaatcgccatttcaatatttcacttcactaccaaacacacagatctcttcaacccatatatggatt |
20801258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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