View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_low_10 (Length: 412)
Name: NF18465_low_10
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 2630884 - 2631278
Alignment:
| Q |
18 |
aacaagaattaacaaagacactcaaaagcatcgaaggcaaagacaccaaaatgctaaccacgattttggcagcacttcgcccatcaaatttgagtcaata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2630884 |
aacaagaattaacaaagacactcaaaagcatcgaagacaaagacaccgaagtgctaaccacgattttggcagcacttcgcccatcaaatttgagtcaata |
2630983 |
T |
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| Q |
118 |
ttcaaccattcgtttcttaaagatcctttcagagccaaatggataaagctaacattataaatataatgctgaattcgatttgttgattgcatatgacatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2630984 |
ttcaaccattcgtttcttaaagatcctttcagagccaaatggataaagctaacattataaatataatgctgaattcgatttgttgattgcatatgacatg |
2631083 |
T |
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| Q |
218 |
cacctaatcgatctactccaaactcccgcgaagttgttatcatgaaactgtttaaatcaaattaacttccatgggcccgtcgacattaatttgcctccag |
317 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631084 |
catctaatcgatcaactccaaactcccgcgaagttgttatcatgaaactgtttaaatcaaattaacttccatgggcccgtcgacattaatttgcctccag |
2631183 |
T |
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| Q |
318 |
attgtcaaaacgtacttaatggcattggcattcaaaatagagcttcatatcttctttnnnnnnnnntagagctgatatcactcattttataatgt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2631184 |
attgtcaaaacgtacttaatggcattggcattcaaaatagagcttcatatcttcttaaaaaaaaaatagagctgatatcactcattttataatgt |
2631278 |
T |
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