View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_low_12 (Length: 375)
Name: NF18465_low_12
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 46 - 362
Target Start/End: Original strand, 54803418 - 54803734
Alignment:
| Q |
46 |
aaaattttatagcatgattatacgggcaaatgaaattgacgaaaccatggtgacaccataatattgttatagctctaaagttgaataaaaaatatcactc |
145 |
Q |
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| T |
54803418 |
aaaattttatagcatgattatatgggcaaatgaaattgacgaaaccatggtgacaccataatattgttatagctctaaagttgaataaaaaatatcactc |
54803517 |
T |
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| Q |
146 |
aatattttttagattagaatattatgatagatacccctnnnnnnntattatgatagatgtgttgggtatagaataagatatgaataatacaaatatcatt |
245 |
Q |
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| T |
54803518 |
aatattttttaaattagaatattatgatagatgcccctaaaaaaatattatgatagatgtgttgggtatagaataagatatgaataatacaaatatcatt |
54803617 |
T |
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| Q |
246 |
ttcaccttcgtggaattttttccacaccctttttaaattttataaattaatccaaacgcacacttcaatagtataagcatgtaatctttagtagtcccaa |
345 |
Q |
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| T |
54803618 |
ttcaccttcgtggaattttttccacaccctttttaaattttataaattaatccaaacgcacacttcaatagtataagcatgtaatctttagtagtcccaa |
54803717 |
T |
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| Q |
346 |
caaagatagtaactaac |
362 |
Q |
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| T |
54803718 |
caaagatagtaactaac |
54803734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 54802993 - 54803033
Alignment:
| Q |
14 |
gaaaaggacgggttattactcaagttgagaagaaaatttta |
54 |
Q |
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| T |
54802993 |
gaaaaggacaggttattactcaagttgagaagaaaatttta |
54803033 |
T |
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