View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_low_15 (Length: 353)
Name: NF18465_low_15
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 37140839 - 37140597
Alignment:
| Q |
1 |
taatcgaggtggtttgtttagtggcggtggttccggtggtgttggtggcgaccctttcacaagaaggacacatagtgagagtggtagctggaagttgcat |
100 |
Q |
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| T |
37140839 |
taatcgaggtggtttgtttagtggtggtggttccggtggtgttggtggcgaccctttcacaagaaggacacatagtgagagtggtagctggaagttgcat |
37140740 |
T |
|
| Q |
101 |
gtagaatggttgagaagttttcaaagctctcaattcctgaagttccttttgtaatcttttattttcttctgttagagtctcacaacatctttttaagtat |
200 |
Q |
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| T |
37140739 |
gtagaatggttgagaagttttcaaagctctcaattcctgaagttccttttgtaatcttttattttcttctgtcagagtctcacaacatctttttaagtat |
37140640 |
T |
|
| Q |
201 |
tcacaatccacttccgtttgctttaacttggtcctgtacagta |
243 |
Q |
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| T |
37140639 |
tcacaatccacttccgtttgctttgacttggtcctgtacagta |
37140597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 23336802 - 23336623
Alignment:
| Q |
56 |
ttcacaagaaggacacatagtgagagtggtagctggaagttgcatgtagaatggttgagaagttttcaaagctctcaattcctgaagttccttttgtaat |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||||| |
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| T |
23336802 |
ttcacaagaaggacacatagtgagagtggtagctggaagttgcatgtagaatggttgagtagttttcaaagctctaagctcttgaagttccttttgtaat |
23336703 |
T |
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| Q |
156 |
cttttattttcttctgttagagtctcacaacatctttttaagtattcacaatccacttccgtttgctttaacttggtcct |
235 |
Q |
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| T |
23336702 |
cttctattctcttctgttaatgtctcacaacatctcttcaaatactcacaatccacttctgtttgctttaactttgtcct |
23336623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 25901537 - 25901716
Alignment:
| Q |
56 |
ttcacaagaaggacacatagtgagagtggtagctggaagttgcatgtagaatggttgagaagttttcaaagctctcaattcctgaagttccttttgtaat |
155 |
Q |
| |
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|||||||||||| |||||||| | ||| || ||||| | |||||||| |||||| | |||||||| |||||||| ||||| ||||||||||| |||| |
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| T |
25901537 |
ttcacaagaagggcacatagttaaagtagttgctggtaattgcatgttgaatggatttgaagtttttaaagctcttaattcttgaagttccttgtgtagc |
25901636 |
T |
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| Q |
156 |
cttttattttcttctgttagagtctcacaacatctttttaagtattcacaatccacttccgtttgctttaacttggtcct |
235 |
Q |
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| T |
25901637 |
ctcctattttcttctgttagtgtttcacagcatctctttaagtattcacaatccacttctgtttgcttcaacttagtcct |
25901716 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 891184 - 891119
Alignment:
| Q |
171 |
gttagagtctcacaacatctttttaagtattcacaatccacttccgtttgctttaacttggtcctg |
236 |
Q |
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|||||||||||||| ||||| || ||||| |||||||||||||| |||||||| |||||||||||| |
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| T |
891184 |
gttagagtctcacagcatctcttcaagtactcacaatccacttcagtttgcttcaacttggtcctg |
891119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 4059241 - 4059100
Alignment:
| Q |
95 |
ttgcatgtagaatggttgagaagttttcaaagctctcaattcctgaagttccttttgtaatcttttattttcttctgttagagtctcacaacatcttttt |
194 |
Q |
| |
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||||||||||||| || | ||| |||||| ||||| || || || | ||| ||||| || | | ||||||| || |||||| |||||||||||||||| |
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| T |
4059241 |
ttgcatgtagaattgtggggaaagtttcaatgctcttaactcttgcacttctttttgcaaccgtctattttcatccgttagattctcacaacatcttttc |
4059142 |
T |
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| Q |
195 |
aagtattcacaatccacttccgtttgctttaacttggtcctg |
236 |
Q |
| |
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|| |||||||||| || || |||||||| ||||| |||||| |
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| T |
4059141 |
aaaaattcacaatctacctctgtttgcttcaacttagtcctg |
4059100 |
T |
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