View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_low_16 (Length: 349)
Name: NF18465_low_16
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 46756311 - 46755985
Alignment:
| Q |
19 |
aataatataatagtaacatgtattttacagtacacaactcggttatatgcataaataataaacgaagaaataaagctatattatgtatttccaattaagt |
118 |
Q |
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| T |
46756311 |
aataatataatagtaacatgtattttacagtacacaactcagttatatgcataaataataaacgaagaaataaagctatattatgtatttccaattaagt |
46756212 |
T |
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| Q |
119 |
cgagtttcacttatagttgatatataatacatgctctccaagtacaa--acgaccacactattatgtagttgtccattacaagtctttatttaaccttcg |
216 |
Q |
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| T |
46756211 |
caagtttcacttatagttgatatataatacatgctctccaagtacaaacacgaccacactattatgtagttgtccattacaagtctttatttaaccttcg |
46756112 |
T |
|
| Q |
217 |
aggacaatcacgaaatgaaataacattcgatttaaccctcatgttatgttatgtgaacataaaaatgtagaaacagttaactaaccaccttataagaaag |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46756111 |
aggacaatcacgaaatgaaataacattctatttaaccctc-----atgttatgtgaacataaaaatgtagaaacagttaactaaccaccttataagaaag |
46756017 |
T |
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| Q |
317 |
cttctctttcagccgcagaataatctacccac |
348 |
Q |
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||||||| ||||||||||| |||||| |||| |
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| T |
46756016 |
cttctctatcagccgcagagcaatctagccac |
46755985 |
T |
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