View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_low_19 (Length: 301)
Name: NF18465_low_19
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 48590892 - 48590619
Alignment:
| Q |
15 |
gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactaaaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc |
114 |
Q |
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| T |
48590892 |
gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactacaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc |
48590793 |
T |
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| Q |
115 |
actggttggttgttgcttaattaattgaaattacttgcaggaattttttgtttgaaccgaaaaacagtaaaaataaaaacaattgtaccccagacacaac |
214 |
Q |
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| T |
48590792 |
actggttggttgttgcttaagtaattaaaattacttgcaggaattttttgtttgaactgaaaaacaataaaaataaaaacaattgtactcccgacacaac |
48590693 |
T |
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| Q |
215 |
--nnnnnnnntgattttgtttctagttagagagtggattatgtgttaaatgcatatatcaatgacacatggtat |
286 |
Q |
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| T |
48590692 |
aaaaaaaaattgattttatttctttaaaaagagtggattatgtgttaaatgcatatatcaatgacacatggtat |
48590619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 48600587 - 48600314
Alignment:
| Q |
15 |
gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactaaaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc |
114 |
Q |
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| T |
48600587 |
gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactacaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc |
48600488 |
T |
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| Q |
115 |
actggttggttgttgcttaattaattgaaattacttgcaggaattttttgtttgaaccgaaaaacagtaaaaataaaaacaattgtaccccagacacaac |
214 |
Q |
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| T |
48600487 |
actggttggttgttgcttaagtaattaaaattacttgcaggaattttttgtttgaactgaaaaacagtaaaaataaaaacaattttactcccgacacaac |
48600388 |
T |
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| Q |
215 |
--nnnnnnnntgattttgtttctagttagagagtggattatgtgttaaatgcatatatcaatgacacatggtat |
286 |
Q |
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| T |
48600387 |
aaaaaaaaattgattttatttctttaaaaagagtggattatgtgttaaatgcatatatcaatgacacatggtat |
48600314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 48595978 - 48595701
Alignment:
| Q |
11 |
caaagggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactaaaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttt |
110 |
Q |
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| T |
48595978 |
caaagggagggtcggtaacatgtgactgtcttgctttctcattatgaaactacaaatatcgttttttattaaaacaaggatagtgttatgtagatctttt |
48595879 |
T |
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| Q |
111 |
taccactggttggttgttgcttaattaattgaaattacttgcaggaattttttgtttgaaccgaaaaacagtaaaaataaaaacaattgtaccccagaca |
210 |
Q |
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| T |
48595878 |
taccactggttggttgttgctcaagtaattaaaattacttgcaggaattttttgtttgaactgaaaaacaataaaaataaaaacaattgtactcccgaca |
48595779 |
T |
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| Q |
211 |
caac--nnnnnnnntgattttgtttctagttagagagtggattatgtgttaaatgcatatatcaatgacacatggtat |
286 |
Q |
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| T |
48595778 |
caacaaaaaaaatttgattttatttctacttaaagagtggattatgtgttaaatgcatatatcaatgacacatggtat |
48595701 |
T |
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