View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_low_20 (Length: 297)
Name: NF18465_low_20
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 2098013 - 2098281
Alignment:
| Q |
15 |
ctgtctacggagattccgaacttgttatcaatcaggtatgttcatagagtatgcattattatctttaacttaaaattacagtacatttgaatgttgatat |
114 |
Q |
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| T |
2098013 |
ctgtctacggagattccgaacttgttatcaatcaggtatgttcatagagtatgcattattatctttaacttaaaattacagtacatttgaatgttgatat |
2098112 |
T |
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| Q |
115 |
atggaaaacataatccaattgttcataaaaaagatacatggtgattcgataattctgagcaatgacacgatttctttgttaaaacaaccatggaactatc |
214 |
Q |
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| T |
2098113 |
--ggaaaacataatccaattgttcataaaaaagatacatggtgattcgataattctgagcgatgacacgatttctttgttaaaacaaccatggaactatc |
2098210 |
T |
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| Q |
215 |
cccttcctagacaaaagaaaggcttctctgaattcatttagtttcatattcttcctaattggttagatatt |
285 |
Q |
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| T |
2098211 |
cccttcctagaaaaaagaaaggcttctctgaattcatttagtttcatattcttcctaattggttagatatt |
2098281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 132 - 285
Target Start/End: Original strand, 2106582 - 2106741
Alignment:
| Q |
132 |
attgttcataaaaaagatacatggtgattcgataattctgagcaatgacacgatttctttgtt-aaaacaaccatggaactatccccttcct----agac |
226 |
Q |
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| T |
2106582 |
attgttcataaaaaagatacatggtgatttgataattctaagcgatgacatgatttctttgttaaaaacaactatggaactatccctttcttaaaaaaaa |
2106681 |
T |
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| Q |
227 |
aaaagaaaggcttctctgaattcatttagtttcatattc-ttcctaattggttagatatt |
285 |
Q |
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| T |
2106682 |
aaaaaaaaggctcctttgaattcatttagttttatatcctttcctaattggttagatatt |
2106741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 2082854 - 2082911
Alignment:
| Q |
227 |
aaaagaaaggcttctctgaattcatttagtttcatattcttcctaattggttagatatt |
285 |
Q |
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|||||||||| |||| || |||||||||||| ||||||| ||||||||||||||||||| |
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| T |
2082854 |
aaaagaaaggtttctttggattcatttagtt-catattcatcctaattggttagatatt |
2082911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 2106502 - 2106544
Alignment:
| Q |
15 |
ctgtctacggagattccgaacttgttatcaatcaggtatgttc |
57 |
Q |
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| T |
2106502 |
ctgtctacggagactccgaacttgttatcaatcaggtctgttc |
2106544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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