View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_low_22 (Length: 289)
Name: NF18465_low_22
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 2668091 - 2667814
Alignment:
| Q |
1 |
tctagaagacatacgcaaaaaata---gaacatggtcgaaaattgacttagcagttagcaccatatacgtcacgcaatttcatttggtaattaaggaagg |
97 |
Q |
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| T |
2668091 |
tctagaaaacatacgcaaaaaaaaacagaacatggtcgaaaattgacttagcagttagcaccatatacgttacgcaatttcatttggtaattaaggaagg |
2667992 |
T |
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| Q |
98 |
at----ttccgtcttcaagacttgggtcatgaagaaaagttcaaagaacacaatgtctatagaggcggcgaatcattacacattccattattaggataat |
193 |
Q |
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| T |
2667991 |
aaagacttcagtcttcagaacttgggtcatgaagaaaagttcaaagaacacaatgtctatagaggcggcgaatcattacacattccattattaggataat |
2667892 |
T |
|
| Q |
194 |
aaa----gagaaaataaatgtggagcattctagtatgtgtgtgnnnnnnnaaacgggaaaagata-tatgaggaatgt |
266 |
Q |
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||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
2667891 |
aaagagagagaaaaaaaatgtggagcattctagtatgtgtgtgtttttttaaacgggaaaagatattatgaggaatgt |
2667814 |
T |
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