View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18465_low_24 (Length: 253)

Name: NF18465_low_24
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18465_low_24
NF18465_low_24
[»] chr8 (5 HSPs)
chr8 (1-248)||(560315-560562)
chr8 (82-181)||(894435-894534)
chr8 (88-170)||(548689-548771)
chr8 (88-170)||(23423833-23423915)
chr8 (80-176)||(3770141-3770237)
[»] scaffold0184 (2 HSPs)
scaffold0184 (130-215)||(15186-15271)
scaffold0184 (83-181)||(11588-11686)
[»] scaffold0078 (3 HSPs)
scaffold0078 (130-215)||(57573-57658)
scaffold0078 (130-215)||(22284-22369)
scaffold0078 (130-215)||(3030-3115)
[»] chr7 (3 HSPs)
chr7 (143-181)||(41511445-41511483)
chr7 (130-215)||(16566686-16566771)
chr7 (130-215)||(16598891-16598976)
[»] chr6 (4 HSPs)
chr6 (143-181)||(845020-845058)
chr6 (143-181)||(870304-870342)
chr6 (132-181)||(8294437-8294486)
chr6 (132-181)||(33257269-33257318)
[»] chr1 (1 HSPs)
chr1 (143-185)||(27224176-27224218)
[»] scaffold0428 (1 HSPs)
scaffold0428 (132-181)||(1387-1436)
[»] chr5 (1 HSPs)
chr5 (132-189)||(13658695-13658752)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 560315 - 560562
Alignment:
Q  1 tcctttacaactatgcctttgctattatactttgtcctcatagcaatcttgaggccattagttaccaatgcagcattgcttctttgttcagcaaataatg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  560315 tcctttaccactatgcctttgctattatactttgtcctcatagcaatcttgaggccattagttaccaatgcagcattgcttctttgttcagcaaataatg 560414  T
Q  101 gccaagctatcattgggacaccatgaacaatactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgtttaaggacttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  560415 gccaagctatcattgggacaccatgaacaatactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgtttaaggacttc 560514  T
Q  201 aacttgtggtgcccaaccacacataacaaaaccttgtcctttgcttct 248  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  560515 aacttgtggtgcccaaccacacataacaaaaccttgtcctttggttct 560562  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 894435 - 894534
Alignment:
Q  82 ctttgttcagcaaataatggccaagctatcattgggacaccatgaacaatactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattg 181  Q
    ||||||||||||||||  ||||| || ||||| || ||||||| ||| | |||||||||| |||||  ||||||||||||| | |||||  |||||||||    
T  894435 ctttgttcagcaaatagaggccatgcaatcataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattg 894534  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 548689 - 548771
Alignment:
Q  88 tcagcaaataatggccaagctatcattgggacaccatgaacaatactctccaaaattgaattccaaccacaatgagttaaaaa 170  Q
    |||||||| ||||||||||| ||||| || ||||||| ||| | || ||| ||| ||||| |||||||||||||||| |||||    
T  548689 tcagcaaacaatggccaagcaatcataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaa 548771  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 23423915 - 23423833
Alignment:
Q  88 tcagcaaataatggccaagctatcattgggacaccatgaacaatactctccaaaattgaattccaaccacaatgagttaaaaa 170  Q
    |||||||| ||||||||||| ||||| || ||||||| ||| | || ||| ||| ||||| |||||||||||||||| |||||    
T  23423915 tcagcaaacaatggccaagcaatcataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaa 23423833  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 3770141 - 3770237
Alignment:
Q  80 ttctttgttcagcaaataatggccaagctatcattgggacaccatgaacaatactctccaaaattgaattccaaccacaatgagttaaaaatgcacc 176  Q
    ||||||| ||| |||| |||||||||| || |||||| || ||    ||||||||||| |   ||||||||||||||||||| ||||||||| ||||    
T  3770141 ttctttgatcaccaaacaatggccaagttaccattggcactcccgacacaatactctcaagtgttgaattccaaccacaatgtgttaaaaatccacc 3770237  T

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Target: scaffold0184 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 15186 - 15271
Alignment:
Q  130 atactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgtttaaggacttcaacttgtggtgccca 215  Q
    ||||||||||||| ||||||||||||||||||| |||||||| |||||| ||   | |||||||| | ||||||||| ||||||||    
T  15186 atactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgccca 15271  T

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Target: scaffold0184; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 11588 - 11686
Alignment:
Q  83 tttgttcagcaaataatggccaagctatcattgggacaccatgaacaatactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattg 181  Q
    |||| |||||||| || |||||||| ||||| || |||||    || | |||||| | || ||||||||||||||||||||| ||||||||||||||||    
T  11588 tttgctcagcaaacaaaggccaagcaatcataggcacacccaacactacactctcaagaactgaattccaaccacaatgagtcaaaaatgcaccaattg 11686  T

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Target: scaffold0078 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 57658 - 57573
Alignment:
Q  130 atactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgtttaaggacttcaacttgtggtgccca 215  Q
    ||||||||||||| ||||||||||||||||||| |||||||| |||||| ||   | |||||||| | ||||||||| ||||||||    
T  57658 atactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgccca 57573  T

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Target: scaffold0078; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 22369 - 22284
Alignment:
Q  130 atactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgtttaaggacttcaacttgtggtgccca 215  Q
    ||||||||||||| ||||||||| ||||||||| |||||||| |||||| ||  || |  ||||| | || |||||||||||||||    
T  22369 atactctccaaaactgaattccatccacaatgacttaaaaatccaccaactgacttttccttaagtatttgaacttgtggtgccca 22284  T

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Target: scaffold0078; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 3115 - 3030
Alignment:
Q  130 atactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgtttaaggacttcaacttgtggtgccca 215  Q
    ||||| |||||| | |||||||||||||||||| |||||||| |||||| ||  || || || || | ||||||||| ||||||||    
T  3115 atactttccaaagtcgaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgccca 3030  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 41511483 - 41511445
Alignment:
Q  143 ttgaattccaaccacaatgagttaaaaatgcaccaattg 181  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  41511483 ttgaattccaaccacaatgagtcaaaaatccaccaattg 41511445  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 16566771 - 16566686
Alignment:
Q  130 atactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgtttaaggacttcaacttgtggtgccca 215  Q
    ||||| |||||| | |||||||||||||||||| |||||||| |||||| ||  || || || || | ||||||||| ||||||||    
T  16566771 atactttccaaagtcgaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgccca 16566686  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 16598891 - 16598976
Alignment:
Q  130 atactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgtttaaggacttcaacttgtggtgccca 215  Q
    ||||| |||||| | |||||||||||||||||| |||||||| |||||| ||  || || || || | ||||||||| ||||||||    
T  16598891 atactttccaaagtcgaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgccca 16598976  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 845020 - 845058
Alignment:
Q  143 ttgaattccaaccacaatgagttaaaaatgcaccaattg 181  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  845020 ttgaattccaaccacaatgagttaaaaacccaccaattg 845058  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 870304 - 870342
Alignment:
Q  143 ttgaattccaaccacaatgagttaaaaatgcaccaattg 181  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  870304 ttgaattccaaccacaatgagttaaaaacccaccaattg 870342  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 8294437 - 8294486
Alignment:
Q  132 actctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattg 181  Q
    |||||||||| ||||| |||||||||||||| |||||||  |||||||||    
T  8294437 actctccaaagttgaactccaaccacaatgacttaaaaacccaccaattg 8294486  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 33257318 - 33257269
Alignment:
Q  132 actctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattg 181  Q
    |||||||||| ||||| |||||||||||||| |||||||  |||||||||    
T  33257318 actctccaaagttgaactccaaccacaatgacttaaaaaaccaccaattg 33257269  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 27224176 - 27224218
Alignment:
Q  143 ttgaattccaaccacaatgagttaaaaatgcaccaattgcttt 185  Q
    ||||||||||||||||||| || ||||||||||| ||||||||    
T  27224176 ttgaattccaaccacaatgtgtcaaaaatgcacctattgcttt 27224218  T

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Target: scaffold0428 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 1436 - 1387
Alignment:
Q  132 actctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattg 181  Q
    |||||||||| ||||| |||||||||||||| |||||||  |||||||||    
T  1436 actctccaaagttgaactccaaccacaatgacttaaaaaaccaccaattg 1387  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 13658752 - 13658695
Alignment:
Q  132 actctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgt 189  Q
    |||||||||| | |||||||| |||| ||| || ||||| ||||||||||||||||||    
T  13658752 actctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgt 13658695  T

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