View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_low_4 (Length: 514)
Name: NF18465_low_4
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 51 - 501
Target Start/End: Original strand, 2631402 - 2631854
Alignment:
| Q |
51 |
gatcgattatgtgaattgattaaatatgcattaat--------aaatttaataattcacacaaccacttaatcgactaatctatcattgtaattgaaaat |
142 |
Q |
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| T |
2631402 |
gatcgattatgtgaattgattaaatatgcattaatcaattaataaatttaataattcacacaaccacttaatcgactaatctatcattgtaattcaaaat |
2631501 |
T |
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| Q |
143 |
cattaacttattctgatacaactaattaagtgtgatatatcttgaacaaaatcgtgaagtcctactctacaagtaacaaatatggccccgttgcatttaa |
242 |
Q |
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| T |
2631502 |
cattaacttattctgatacaactaattaagtgtgatatatcttgaacaaaatcgtgaagtccaactctacaagtaacaaatatggccccgttgcatttaa |
2631601 |
T |
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| Q |
243 |
gatgacattaaattcaacaagtggtcaaatttcaccatcatggtgccagtgccatttttccacggcactatggtatggtaggtagaaccttatggtatgt |
342 |
Q |
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| T |
2631602 |
gatgacattaaat-caacaagtggtcaaatttcaccatcatggtgccagtgccatttttccacggcactatg-----gtaggtagaaccttatggtatgt |
2631695 |
T |
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| Q |
343 |
atgtaccatcatatgcagatgaatgtcaaaaagaaaaagagatagagttgggacatgatctttaatttaaatcaagccaagccagatgtctatcttataa |
442 |
Q |
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| T |
2631696 |
atgtaccatcatatgcacatgaatgtcaaaaagaaaaagagatagagttgggacatgatctttaatttaaatcaagccaagccagatgtctatcttataa |
2631795 |
T |
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| Q |
443 |
gttagagttagcaatgccccaactagagataggacaacgactccattaacatcgatggt |
501 |
Q |
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| T |
2631796 |
gttagagttagcaatgccccaactagagataggacaacgactccattaccatcgatggt |
2631854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 2631331 - 2631360
Alignment:
| Q |
1 |
taaattttactaataaatctatcattgtag |
30 |
Q |
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| T |
2631331 |
taaattttactaataaatctatcattgtag |
2631360 |
T |
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