View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18465_low_9 (Length: 427)
Name: NF18465_low_9
Description: NF18465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18465_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Complemental strand, 15283884 - 15283479
Alignment:
| Q |
15 |
aaaagcttcttagtaaccctaatttgaatttcacatcttttgttggtggaaaagagaacacattttactatgttgagataaaatctattatagttggtgg |
114 |
Q |
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| T |
15283884 |
aaaagcttcttagtaaccctaatttgaatttcacatcttttgttggtggattagagaacacattttactatgttgagataaaatctattatagttggtgg |
15283785 |
T |
|
| Q |
115 |
tgaagtgctaaaaataccaaaagaaacatggaatttaaatgaagatggttctggtggtacaataatcgattccggtacaactttaacttattttgctgga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15283784 |
tgaagtgctaaaaataccaaaagaaacatggaatttaaatgaagatggttctggtggtacaataatcgattccggtacaactttaacttattttgctgga |
15283685 |
T |
|
| Q |
215 |
ccagcttatgagattattcaagaagcattcatgaagaaaattaagggttattcaatagttgaaagtttttcacctttaaagctatgttataatgtgagtg |
314 |
Q |
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| T |
15283684 |
ccagcttatgagattattcaagaagcattcatggagaaaattaagggttattcaatagttgaaagttttgcacctttaaagctatgttataatgtgagtg |
15283585 |
T |
|
| Q |
315 |
gagttgaagaaatggaattgcctgaatttggaatattgttttcagatggagctgtttgggattttcctgttgagaattactttattcaaattgaatctga |
414 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15283584 |
gaattgaagaaatggaattgcctgaatttggaatattgttttcagatggagctgtttgggattttcctgttgagaattactttattcagattgaatctga |
15283485 |
T |
|
| Q |
415 |
tgatgt |
420 |
Q |
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|||||| |
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| T |
15283484 |
tgatgt |
15283479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 39713246 - 39713643
Alignment:
| Q |
20 |
cttcttagtaaccctaatttgaatttcacatcttttgttggtggaaaagagaac---------acattttactatgttgagataaaatctattatagttg |
110 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| |||| |
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| T |
39713246 |
cttcttagccaccctaatttgaatttcacttcttttgttggtggtgaagagaattctgttgatacattttactatgttgggataaaatctattatggttg |
39713345 |
T |
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| Q |
111 |
gtggtgaagtgctaaaaataccaaaagaaacatggaatttaaatgaagatggttctggtggtacaataatcgattccggtacaactttaacttattttgc |
210 |
Q |
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|||||| ||| | || |||||| ||||||| ||| |||| |||| ||| ||||||||||||||| ||||| || || ||||||||||||||||| |
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| T |
39713346 |
atggtgaggtgttgaagataccagaagaaacttggcatttgtcaaaagaaggtggtggtggtacaataattgattctggaactactttaacttattttgc |
39713445 |
T |
|
| Q |
211 |
tggaccagcttatgagattattcaagaagcattcatgaagaaaattaagggttattcaatagttgaaagtttttcacctttaaagctatgttataatgtg |
310 |
Q |
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|| ||| |||||||||||||| |||| || |||||||| || |||||||||||| | | ||||| ||||| ||||| | |||| ||||||||||||| |
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| T |
39713446 |
tgaacctgcttatgagattatcaaagaggctttcatgaaaaagattaagggttatgaacttgttgagggttttccacctcttaagccatgttataatgtg |
39713545 |
T |
|
| Q |
311 |
agtggagttgaagaaatggaattgcctgaatttggaatattgttttcagatggagctgtttgggattttcctgttgagaattactttattcaaattga |
408 |
Q |
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||| ||||| ||||||| | ||||| ||||| ||||| ||||| |||||||| | |||||||||||||| |||||||||||||| || ||||| |
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| T |
39713546 |
tcaggaattgaaaaaatggagctacctgattttgggatattattttctgatggagcaatgtgggattttcctgtggagaattactttatacagattga |
39713643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 189 - 420
Target Start/End: Original strand, 33000950 - 33001185
Alignment:
| Q |
189 |
gtacaactttaacttattttgctggaccagcttatgagattattcaagaagcattcatgaagaaaattaagggttattcaatag----ttgaaagttttt |
284 |
Q |
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||||| |||||||||||||||||| ||| ||||||||| ||| | ||||||||||||||||||||||| || ||| || | ||||||||||| |
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| T |
33000950 |
gtacatctttaacttattttgctgaacctagttatgagatcattaaggaagcattcatgaagaaaattaaagggaatttaagaaagttttgaaagttttg |
33001049 |
T |
|
| Q |
285 |
cacctttaaagctatgttataatgtgagtggagttgaagaaatggaattgcctgaatttggaatattgttttcagatggagctgtttgggattttcctgt |
384 |
Q |
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|||||| ||||| ||||||||||||||||||| || ||||||||||||| |||| ||||||||| |||||||||||||| || |||||||||||| | | |
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| T |
33001050 |
caccttcaaagccatgttataatgtgagtggaatttaagaaatggaattacctggatttggaattttgttttcagatggtactttttgggattttctttt |
33001149 |
T |
|
| Q |
385 |
tgagaattactttattcaaattgaatctgatgatgt |
420 |
Q |
| |
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||||||||||| ||||| ||||||| || |||||| |
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| T |
33001150 |
agagaattacttaattcagattgaatatggtgatgt |
33001185 |
T |
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