View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18466_high_1 (Length: 660)
Name: NF18466_high_1
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 148 - 648
Target Start/End: Complemental strand, 41182692 - 41182192
Alignment:
| Q |
148 |
ggacaatagcattaatttgttcagaattagatgtcaccatttgcctatttttattttcgattttcaccctttttatatatcaaacccttnnnnnnnnnnn |
247 |
Q |
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| T |
41182692 |
ggacaatagcattaatttgttcagaattagatgtcaccatttgcctatttttattttcgattttcaccctttttatatatcaaacccttaaaaaagtaaa |
41182593 |
T |
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| Q |
248 |
nnnggtaaatcttgtttacctattgatctagtaattattttcacaaaaatacaaatacaaaaacttcaaagaatttttaacattgtcagaatttcaggca |
347 |
Q |
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| T |
41182592 |
aaaggtaaatcttgtttacctattgatctagtaattattttcacaaaaatacaactacaaaaacttcaaagaatttttaacaatgtcagaatttcaggca |
41182493 |
T |
|
| Q |
348 |
cacacgttattgtttttaagctnnnnnnnggaattgcactgaccttgttggtggtctcaattaaagccaaagagagagtgtgatgtaagtaagatcgtac |
447 |
Q |
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| T |
41182492 |
cacacgttattgtttttaagctaaaaaaaggaactgcactgaacttgttggtggtctcaattaaagccaaagagagagtgtgatgtaagtaagatcgtac |
41182393 |
T |
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| Q |
448 |
ttaatttgtcgttctccaatgaaatggacattattagttttaacttttaatactaattatggtattttttatgaaatattttagttaagctatgattagt |
547 |
Q |
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| T |
41182392 |
ttaatttgtcgttctccaatgaaatggacattagtagttttaacttttaatactaattatggtattttttatgaaatattttagttaagctatgattagt |
41182293 |
T |
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| Q |
548 |
aatagttgcttgtaaaacaagtggagtatagtcaaacatagagaactctactcatatttgttaattacttgattgattgacaaatttggtgatcctgcct |
647 |
Q |
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| T |
41182292 |
aatagttgcttgtaaaacaagtggagtatagtcaaacatagagaactctactcatatttgttaattacttgattgattgacaaatttggtgatcctgcct |
41182193 |
T |
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| Q |
648 |
t |
648 |
Q |
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| T |
41182192 |
t |
41182192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 41182780 - 41182726
Alignment:
| Q |
60 |
gaaccaaagatttgtactgttaagcatgtaaagggtgaaacaaactaatccaata |
114 |
Q |
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| T |
41182780 |
gaaccaaagatttgtactgttaagcatgtaaagggtgaaacaaactaatccaata |
41182726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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