View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18466_high_11 (Length: 360)
Name: NF18466_high_11
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 2529594 - 2529262
Alignment:
| Q |
17 |
caaattcatggaagttctatgacaaaaggaaatctttgttgtggcaatttattttttctgatgctgcaaatgcaacttggatagcagttttaggaagtga |
116 |
Q |
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| T |
2529594 |
caaattcatggaagttctatgacaaaaggaaatcattgttgtggcaatttattttttctgatgctgcaaatgcaacttggatagcagttttaggaagtga |
2529495 |
T |
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| Q |
117 |
tggcttcataactttcaccaatcttaaaaataaaggctcaagtggttcatcgacaacaagaatacctcaagattcttgtagtacaccacaaccttgtgga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2529494 |
tggcttcataactttcaccaatcttaaaaataaaggctcaagtggttcatcgacaacaagaatacctcaagattcttgtagtacaccacaaccttgtgga |
2529395 |
T |
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| Q |
217 |
ccttataacatatgcattggtgacaaaaaatgcagttgcccttctgttcttagctccagtcctagttgtgaaccgggttttgtttctccttgtaactcga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
2529394 |
ccttataacatatgcattggtgacaaaaaatgcagttgcccttctgttcttagctccagtcctagctgtgaaccgggttttgtttcgccttgtaactcga |
2529295 |
T |
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| Q |
317 |
aaagttccgttgagcttgttaaaggtgatgatg |
349 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2529294 |
aaagttccgttgagcttgttaaaggtgatgatg |
2529262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 31027917 - 31027961
Alignment:
| Q |
170 |
caacaagaatacctcaagattcttgtagtacaccacaaccttgtg |
214 |
Q |
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| T |
31027917 |
caacaagaataccacaagattattgtggtacaccagaaccttgtg |
31027961 |
T |
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