View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18466_high_15 (Length: 299)

Name: NF18466_high_15
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18466_high_15
NF18466_high_15
[»] chr8 (1 HSPs)
chr8 (61-299)||(18706325-18706563)
[»] chr2 (3 HSPs)
chr2 (61-299)||(15743372-15743610)
chr2 (103-299)||(15743732-15743928)
chr2 (103-298)||(36236881-36237076)
[»] chr4 (1 HSPs)
chr4 (103-299)||(19412644-19412840)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 61 - 299
Target Start/End: Complemental strand, 18706563 - 18706325
Alignment:
Q  61 tcctgagaagggtaagctaagagccgggtttaattccgcttttttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctgga 160  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18706563 tcctgagaagagtaaggtaagagccgggtttaattccgcttttttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctgga 18706464  T
Q  161 aactacgcaaaagcatttcctttatacatgaacactttagagtatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactc 260  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18706463 aactatgcaaaagcgtttcctttatacatgaacactttagagtatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactc 18706364  T
Q  261 agaaatgcacagggaatcttcgtcgtgctgaggagatcc 299  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18706363 agaaatgcacagggtatcttcgtcgtgctgaggagatcc 18706325  T

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Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 61 - 299
Target Start/End: Complemental strand, 15743610 - 15743372
Alignment:
Q  61 tcctgagaagggtaagctaagagccgggtttaattccgcttttttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctgga 160  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15743610 tcctgagaagagtaaggtaagagccgggtttaattccgcttttttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctgga 15743511  T
Q  161 aactacgcaaaagcatttcctttatacatgaacactttagagtatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactc 260  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15743510 aactatgcaaaagcgtttcctttatacatgaacactttagagtatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactc 15743411  T
Q  261 agaaatgcacagggaatcttcgtcgtgctgaggagatcc 299  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15743410 agaaatgcacagggtatcttcgtcgtgctgaggagatcc 15743372  T

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Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 103 - 299
Target Start/End: Complemental strand, 15743928 - 15743732
Alignment:
Q  103 tttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctggaaactacgcaaaagcatttcctttatacatgaacactttagag 202  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||    
T  15743928 tttcaaggagcaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctggaaactacgcaagagcgtttccgttatacatgaacgctttagag 15743829  T
Q  203 tatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactcagaaatgcacagggaatcttcgtcgtgctgaggagatcc 299  Q
    |||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||   ||| | ||||||||||||||||||||||||    
T  15743828 tatttcaaaacacatctcaaatacgagaaaaaccctgaaatcaaagaagctattactcagaaattttcagagtatcttcgtcgtgctgaggagatcc 15743732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 103 - 298
Target Start/End: Complemental strand, 36237076 - 36236881
Alignment:
Q  103 tttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctggaaactacgcaaaagcatttcctttatacatgaacactttagag 202  Q
    |||||||||||||||||| || |||||||||||||| ||  | | ||| ||||| ||||||||  ||||||| |||||||||||||||||| ||||||||    
T  36237076 tttcaaggaacaagcaatcgagtacgtgaaacaagccgtagatgcagacaatgccggaaactattcaaaagcgtttcctttatacatgaacgctttagag 36236977  T
Q  203 tatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactcagaaatgcacagggaatcttcgtcgtgctgaggagatc 298  Q
    ||||||||||| ||  | || ||||| ||||||||||||||||||||||| ||||| ||||||| ||| | | || | ||||||||||||||||||    
T  36236976 tatttcaaaacccatttaaagtacgaaaaaaaccctaaaatcagagaagcaattacgcagaaattcaccgagtatttacgtcgtgctgaggagatc 36236881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 103 - 299
Target Start/End: Original strand, 19412644 - 19412840
Alignment:
Q  103 tttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctggaaactacgcaaaagcatttcctttatacatgaacactttagag 202  Q
    ||||||||||||||||||||||| |||||||||||| ||   |||||| ||| |||||||||| |||||||| |||||||||||||||||| | ||||||    
T  19412644 tttcaaggaacaagcaatagaattcgtgaaacaagcagtaacagaagacaattctggaaactatgcaaaagcctttcctttatacatgaacgcgttagag 19412743  T
Q  203 tatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactcagaaatgcacagggaatcttcgtcgtgctgaggagatcc 299  Q
    ||||||||||| || ||||| |||||||||||||||||||| |  ||||| ||||| ||||||| ||| | | ||||||||||||| ||||||||||    
T  19412744 tatttcaaaactcatctcaagtacgagaaaaaccctaaaattaaggaagcaattacgcagaaattcaccgagtatcttcgtcgtgcggaggagatcc 19412840  T

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