View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18466_high_2 (Length: 650)
Name: NF18466_high_2
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_high_2 |
 | |
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| [»] scaffold0139 (1 HSPs) |
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| [»] scaffold0326 (1 HSPs) |
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| [»] scaffold0193 (1 HSPs) |
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| [»] scaffold0309 (1 HSPs) |
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| [»] scaffold0924 (1 HSPs) |
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| [»] scaffold0102 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 109 - 634
Target Start/End: Complemental strand, 2221701 - 2221176
Alignment:
| Q |
109 |
gccggcctggccttaaatcttattttgttcccttcccaataagtagagaaatttattaataaatcaatgatacaatgtcaaagtagtgcatcaaagcata |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2221701 |
gccggcctggccttaaatcttattttgctcccttcccaataagtagagaaatttattaataaatcaatgatacaatgtcaaagtagtgcatcaaagcata |
2221602 |
T |
|
| Q |
209 |
tgcaccctacatgtacaccagttctcaagatctcaaacgnnnnnnncatcaaaaatatacatatgtaaataaaactcctactaagaacacaccctggaat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2221601 |
tgcaccctacatgtacaccagttctcaagatctcaaacgaaaaaaacatcaaaaatatacatatgtaaataaaactcctactaagaacacaccctggaat |
2221502 |
T |
|
| Q |
309 |
tgaacactcacactgtcaagaggcaagcaacaacactagttcaaaccccttaaaagccacccccaaaatccaaaagccttctcaacagaatcagaacata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
2221501 |
tgaacactcacactgtcaagaggcaagcaacaacactagttcaaaccccttaaaagccacccgcaaaatccaaaagccttctcaacagaatcagaacata |
2221402 |
T |
|
| Q |
409 |
tagacaactttaaacaccctgaattttcttattggtttttctatgctgcaaacaaaattttagaatagttcctttgagattacaaccaatcgctcccata |
508 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
2221401 |
tagacaactttaaacaccctgaactttcttattggtttttctatgctgcaaacaaaattgtagaatagttccttcgagattacaaccaatcgctcccata |
2221302 |
T |
|
| Q |
509 |
ccatcagatccaaaactcctccatgatgcctccgttgtattgctcttgtcccttgttcttcttgttgatgattattgttgtctgttcttctccaccactt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2221301 |
ccatcagatccaaaactcctccatgatgcctccgttgtattgctcttgtcccttgttcttcttgttgatgattattgttgtctgttcttctccaccactt |
2221202 |
T |
|
| Q |
609 |
cacctcggatggccattgctgcctat |
634 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
2221201 |
cacctcggatggccattgctgcctat |
2221176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 13322980 - 13323021
Alignment:
| Q |
45 |
ttcagtagggagaccatgtgtttctgagagttactcctatga |
86 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
13322980 |
ttcaggagggagaccatgtgtttctgagagttactcctatga |
13323021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 147 - 440
Target Start/End: Complemental strand, 38284919 - 38284605
Alignment:
| Q |
147 |
ataagtagagaaatttattaataaatcaatgatacaatgtcaaagtagtgcatcaaagcatatgcaccctacatgtacaccagttctcaagatctcaaac |
246 |
Q |
| |
|
||||||||||||||| |||| |||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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|
| T |
38284919 |
ataagtagagaaattcattattaaatcgatgatacaatgtcaaagtagagcatcaaagcagatgcactctacatgtacaccagttctcaagatctcaaac |
38284820 |
T |
|
| Q |
247 |
gnnnnnnncatcaaaaatatacatatgtaaataaaa---ctcctac-------taagaacacaccctggaattgaacactcacactgtcaagaggcaagc |
336 |
Q |
| |
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| ||||||| ||| |||||||||||| | ||||| ||||||||| ||| | |||||| |||||||||| ||||||||||||| |
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| T |
38284819 |
-caaataaaacaaaaaatagacagatgtaaataaaaccccccctactatgaagtaagaacactcccggaaattgagcactcacactatcaagaggcaagc |
38284721 |
T |
|
| Q |
337 |
aacaa----------cactagttcaaaccccttaaaagccacccccaaaatccaaaagccttctcaacagaatcagaacatatagacaactttaa--aca |
424 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| || |
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|
| T |
38284720 |
gacaacactacataccactagttcaaaccccttaaaagccacccccaaaatccaaaagccttctcaacagaatcaaaacaaatcaacaactttaaatact |
38284621 |
T |
|
| Q |
425 |
ccctgaattttcttat |
440 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
38284620 |
ccctgaatttccttat |
38284605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 435 - 562
Target Start/End: Complemental strand, 38284576 - 38284449
Alignment:
| Q |
435 |
tcttattggtttttctatgctgcaaacaaaattttagaatagttcctttgagattacaaccaatcgctcccataccatcagatccaaaactcctccatga |
534 |
Q |
| |
|
|||| |||||||||||||||||||||||| || ||| ||||||||| |||||||||||||| | |||||||||||||| ||||||| ||| ||||||| |
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|
| T |
38284576 |
tcttgttggtttttctatgctgcaaacaatatagtaggctagttccttcgagattacaaccaaccactcccataccatcaaatccaaagctcatccatga |
38284477 |
T |
|
| Q |
535 |
tgcctccgttgtattgctcttgtccctt |
562 |
Q |
| |
|
||||||| ||| ||| |||| |||||| |
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|
| T |
38284476 |
tgcctccattgcgttgatcttttccctt |
38284449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 16072387 - 16072422
Alignment:
| Q |
51 |
agggagaccatgtgtttctgagagttactcctatga |
86 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16072387 |
agggagatcatgtgtttctgagagttactcctatga |
16072422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0139 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0139
Description:
Target: scaffold0139; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 27722 - 27681
Alignment:
| Q |
45 |
ttcagtagggagaccatgtgtttctgagagttactcctatga |
86 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27722 |
ttcaggagggagatcatgtgtttctgagagttactcctatga |
27681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0326 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0326
Description:
Target: scaffold0326; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 18646 - 18681
Alignment:
| Q |
51 |
agggagaccatgtgtttctgagagttactcctatga |
86 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18646 |
agggagatcatgtgtttctgagagttactcctatga |
18681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 1278 - 1313
Alignment:
| Q |
51 |
agggagaccatgtgtttctgagagttactcctatga |
86 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
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|
| T |
1278 |
agggagatcatgtgtttctgagagttactcctatga |
1313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 20008082 - 20008047
Alignment:
| Q |
51 |
agggagaccatgtgtttctgagagttactcctatga |
86 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20008082 |
agggagatcatgtgtttctgagagttactcctatga |
20008047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 21682019 - 21682054
Alignment:
| Q |
51 |
agggagaccatgtgtttctgagagttactcctatga |
86 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21682019 |
agggagatcatgtgtttctgagagttactcctatga |
21682054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 22796883 - 22796918
Alignment:
| Q |
51 |
agggagaccatgtgtttctgagagttactcctatga |
86 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22796883 |
agggagatcatgtgtttctgagagttactcctatga |
22796918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 41308006 - 41307971
Alignment:
| Q |
51 |
agggagaccatgtgtttctgagagttactcctatga |
86 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41308006 |
agggagaccatgtgtttctgagggttactcctatga |
41307971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 9995 - 9961
Alignment:
| Q |
51 |
agggagaccatgtgtttctgagagttactcctatg |
85 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9995 |
agggagatcatgtgtttctgagagttactcctatg |
9961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0924 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0924
Description:
Target: scaffold0924; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 4086 - 4053
Alignment:
| Q |
53 |
ggagaccatgtgtttctgagagttactcctatga |
86 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
4086 |
ggagatcatgtgtttctgagagttactcctatga |
4053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 39942 - 39901
Alignment:
| Q |
45 |
ttcagtagggagaccatgtgtttctgagagttactcctatga |
86 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
39942 |
ttcaggagggagatcatgtatttctgagagttactcctatga |
39901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 91041 - 91073
Alignment:
| Q |
51 |
agggagaccatgtgtttctgagagttactccta |
83 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
91041 |
agggagatcatgtgtttctgagagttactccta |
91073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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