View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18466_high_28 (Length: 201)
Name: NF18466_high_28
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 19549522 - 19549627
Alignment:
| Q |
75 |
gaacatgatttatatagttaagagtttaacggcataagttccaataatcattataatgacctaaataattggttcatggtacttggctagttgcctaaga |
174 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19549522 |
gaacatgatttata--gttaagagtttaacggtataagttccaataatcattataatgacctaaataattggttcatggtacttggctagttgcctaaga |
19549619 |
T |
|
| Q |
175 |
gttgggga |
182 |
Q |
| |
|
|||||||| |
|
|
| T |
19549620 |
gttgggga |
19549627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 7201528 - 7201571
Alignment:
| Q |
16 |
tgaacaatgcataatatatacaaactctggaattcgaacccgac |
59 |
Q |
| |
|
||||||||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
7201528 |
tgaacaatgcataatatatgcaaagtctggagttcgaacccgac |
7201571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University