View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18466_high_7 (Length: 401)

Name: NF18466_high_7
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18466_high_7
NF18466_high_7
[»] chr1 (1 HSPs)
chr1 (4-401)||(2528868-2529265)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 4 - 401
Target Start/End: Original strand, 2528868 - 2529265
Alignment:
Q  4 tcatcaccgtctgaattctgaaccagagattcaggcaaattttcctttttctttgagcattttagtcccacataaatcatgccagaaatgacaaacaatg 103  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2528868 tcatcaccgtctgaattctcgaccagagattcaggcaaattttcctttttctttgagcattttagtcccacataaatcatgccagaaatgacaaacaatg 2528967  T
Q  104 ttactattacaatgatcacaacaactattgtctgcacattcctgtttctactttctgctgtttctgtttctgtgtcactacttccgtctcttgagacttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2528968 ttactattacaatgatcacaacaactattgtctgcacattcctgtttctactttctgctgtgtctgtttctgtgtcactacttccgtctcttgagacttt 2529067  T
Q  204 aatgtaagagacaaaaccagaatcattatcagttttcacaaagcttccaatcctatctaaaaggtaacagtttcctgaactgctttgaaagaacatagca 303  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2529068 aatgtaagaggcaaagccagaatcattatcagttttcacaaagcttccaatcctatctaaaaggtaacagtttcctgaactgctttgaaagaacatagca 2529167  T
Q  304 agacatgagcaggttgcattgcaagaatttttgcaaccaatcaaatcggttttcgaagaaggtggaagaaatccaagtgcaaagtaattgagtccatc 401  Q
    |||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2529168 agacatgagcagttttcactgcaagaatttttgcaaccaatcaaatcggttttcaaagaaggtggaagaaatccaagtgcaaagtaattgagtccatc 2529265  T

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