View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18466_low_10 (Length: 374)
Name: NF18466_low_10
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 4763102 - 4763446
Alignment:
| Q |
18 |
gtatgtagaagttctccaattgttgtgtcaccgagaactaagcaaaatgacgagaaagacgattttctcctccccgagcacaatgactctccatcaacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4763102 |
gtatgtagaagttctccaattgttgtgtcaccgagaactaagaaaaatgacgagaaagacgattttctcctccccgagcacaatgactctccatcaacat |
4763201 |
T |
|
| Q |
118 |
atgcaagtcttgaaaaagatgcatatgagcaagagatcagaaaactgaagaacatggtcataatgcttcaagagagggaaagaagtctcgaggttcaact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4763202 |
atgcaagtcttgaaaaagatgcatatgagcaagagatcagaaaactgaagaacatggtcataatgcttcaagagagggaaagaagtctcgaggttcaact |
4763301 |
T |
|
| Q |
218 |
tcttgaatattgtggtctaagagaacaagaaaccgttgtaatggagcttcaaaacaggttgaaaataagtaacatagaggcgaagatgtttaacctaaag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4763302 |
tcttgaatattgtggtctaagagaacaagaaaccgttgtaatggagcttcaaaacaggttgaaaataagtaacatagaggcaaagatgtttaacctaaag |
4763401 |
T |
|
| Q |
318 |
gttgagacactacaatctgagaataggagattagaggcacaggtt |
362 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4763402 |
gttgagacactgcaatctgagaataggagattagaggcacaggtt |
4763446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 307
Target Start/End: Complemental strand, 43254370 - 43254230
Alignment:
| Q |
167 |
gaacatggtcataatgcttcaagagagggaaagaagtctcgaggttcaacttcttgaatattgtggtctaagagaacaagaaaccgttgtaatggagctt |
266 |
Q |
| |
|
||||||||| | | |||||||||| | |||| || |||||||||||| | ||||| || |||||||| || || |||||||| ||||| |||||||| |
|
|
| T |
43254370 |
gaacatggttagattgcttcaagacaaggaacaaaatctcgaggttcagttgcttgagtactgtggtcttagggagcaagaaacagttgtcatggagctc |
43254271 |
T |
|
| Q |
267 |
caaaacaggttgaaaataagtaacatagaggcgaagatgtt |
307 |
Q |
| |
|
||||| || ||||| |||||||| || |||| |||||||| |
|
|
| T |
43254270 |
caaaatagattgaagataagtaatatggaggtaaagatgtt |
43254230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University