View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18466_low_11 (Length: 374)
Name: NF18466_low_11
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 5352243 - 5351900
Alignment:
| Q |
14 |
acctgtgtaataccagaatgaataatgtgacaagactattatttcataataatacatggaattttaacaaacttcaacataacattgcaaataaaacaca |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
5352243 |
acctatgtaataccagaatgaataatgtgacaagactattatttcataataatacatggaattttaacaaacttcaacataacattgtaaatcaaacaca |
5352144 |
T |
|
| Q |
114 |
ggacaaggcaacaatgcaaataaaattctaaatgtaaataaagaacaaatacgttttattaattgaataaaaatcacgattgaagcaatttatggaactt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352143 |
ggacaaggcaacaatgcaaataaaattctaaatgcaaataaagaacaa-tacatttttttaattgaataaaaatcacgattgaagcaatttatggaactt |
5352045 |
T |
|
| Q |
214 |
aaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352044 |
aaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcg |
5351945 |
T |
|
| Q |
314 |
ccatcaccgttaaattttgctggaggctgaaacgcgtttaagaaa |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351944 |
ccatcaccgttaaattttgctggaggctgaaacgcgtttaagaaa |
5351900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 216 - 358
Target Start/End: Complemental strand, 5345024 - 5344882
Alignment:
| Q |
216 |
agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgcc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||| | || ||| ||||||| ||||||| |||||||||||| || |
|
|
| T |
5345024 |
agttgtttcaatttttgccttgaagttgcagagtaaatgccttcaaggacaacagaattgccaacaacctattcttagcatcttcatcaatcaaatcacc |
5344925 |
T |
|
| Q |
316 |
atcaccgttaaattttgctggaggctgaaacgcgtttaagaaa |
358 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
5344924 |
atcactattaaattttgctggaggctgaaaagcatttaagaaa |
5344882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 5325075 - 5325119
Alignment:
| Q |
222 |
ttcaatttttgccttgaagttgaagggtaaatgccttcaaggaca |
266 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||||||| |
|
|
| T |
5325075 |
ttcaatttctgccttgaagtttaagggtaaattccttcaaggaca |
5325119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 5345433 - 5345382
Alignment:
| Q |
33 |
gaataatgtgacaagactattatttcataataatacatggaattttaacaaactt |
87 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
5345433 |
gaataatgtgacaagactattatttca-aat--tgcatggaattttaacaaactt |
5345382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 5338089 - 5338147
Alignment:
| Q |
216 |
agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaact |
274 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||||||| |||| ||||||| ||||||| |
|
|
| T |
5338089 |
agttgtttcaaatttaaccttgaagctgaagggtaaattcctttaaggacacaagaact |
5338147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 14535283 - 14535375
Alignment:
| Q |
227 |
tttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgccatca |
319 |
Q |
| |
|
|||||||||||||| || |||||||||| ||| || ||||||||| | ||| |||||||| || |||| ||||||||||||||||||| |
|
|
| T |
14535283 |
tttttgccttgaagccttagagtaaatgcctgcaaagataaaagaacttgtttcaacttattcttagcctcttcatcaatcaaatcgccatca |
14535375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University