View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18466_low_13 (Length: 358)
Name: NF18466_low_13
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 33490401 - 33490247
Alignment:
| Q |
18 |
agagggtgttatgaataatttgagtagatttccactagtcattgggtcataccattgacccatttcattggccaatatcgttgtannnnnnnataaatag |
117 |
Q |
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| T |
33490401 |
agagggtgttatgaataatttgagtagatttccactagtcattgggtcataccattgacccatttcattggtcaatatcgttgtatttttttataaatag |
33490302 |
T |
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| Q |
118 |
ccaaataggactccccttgtaatagaaacagattttagaagagtttaatgcaata |
172 |
Q |
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| T |
33490301 |
ccaaataggactccccttgtaatagaaacagattttagaagagtttaatgcaata |
33490247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 234 - 358
Target Start/End: Complemental strand, 33490185 - 33490061
Alignment:
| Q |
234 |
gaggagattcgtaaaaattcaacaacaaaaaattgagatgatatggaaatgtagtatattaatttgagtttgcttttgggagattagaaatatgaaagat |
333 |
Q |
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| T |
33490185 |
gaggagattcgtaacaattcaacaacaaaaaattgagatgatatggaaatttagtatattaatttgagtttgcttttgggagattagaaatatgaaagat |
33490086 |
T |
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| Q |
334 |
ttatataaaataataaataaatctt |
358 |
Q |
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| T |
33490085 |
ttatataaaataataaataaatctt |
33490061 |
T |
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