View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18466_low_15 (Length: 306)
Name: NF18466_low_15
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 22 - 299
Target Start/End: Original strand, 5273508 - 5273779
Alignment:
| Q |
22 |
caaaatcaccatccatagacattatccaaatcctcnnnnnnnnnnnnngattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaact |
121 |
Q |
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| T |
5273508 |
caaaatcaccatccatagacattatccaaatcctcaaaaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaact |
5273607 |
T |
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| Q |
122 |
caactcacaactagttannnnnnnnnnnnnnnnnnnngattctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaa |
221 |
Q |
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| T |
5273608 |
caactcacaactagttacatcatcatcatca------gattctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaa |
5273701 |
T |
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| Q |
222 |
ccaggtttccttaattccctcagtgacagacacaaagtagaactgttacaattccatacactttcctcattcatctca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5273702 |
ccaggtttccttaattccctcagtgacagacacaaagtagaactgttacaattccacacactttcctcattcatctca |
5273779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 36151143 - 36151243
Alignment:
| Q |
171 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
270 |
Q |
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| T |
36151143 |
ggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttac |
36151242 |
T |
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| Q |
271 |
a |
271 |
Q |
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| T |
36151243 |
a |
36151243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 36154535 - 36154629
Alignment:
| Q |
177 |
ttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttaca |
271 |
Q |
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|||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| ||||| |
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| T |
36154535 |
ttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttaca |
36154629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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