View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18466_low_18 (Length: 290)
Name: NF18466_low_18
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 4651735 - 4651882
Alignment:
| Q |
17 |
agtaaagcgttttaggaatccatctatgctctctaatcttcaagttgttgtcatgccctcaaagaaatgtccacgaagatacgccggaacccaatgttgt |
116 |
Q |
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| T |
4651735 |
agtaaagcgttttaggaatccatctatgctctctgatcttcaagttgttgtcatgcccccaaagaaatgtccacgaagatacgccggaacccaatgttgt |
4651834 |
T |
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| Q |
117 |
ttaacttcatacaagccttttatgtgcttgtttgcttctagtttgtac |
164 |
Q |
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| T |
4651835 |
ttaacttcatacaagccttttatgtgcttgtttgcttctagtttgtac |
4651882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 4651858 - 4651955
Alignment:
| Q |
165 |
gtgcttatttgcttctagtttgtacttggaaacaattataatccattcttattcaaaatcatcaatattgtcaagctcgtaaagcttataaaaataag |
262 |
Q |
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| T |
4651858 |
gtgcttgtttgcttctagtttgtacttggaaacaattataatccattcttcttcaaaatcatcaatattgtcaagctggtagagcttataaaaataag |
4651955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 16149128 - 16149275
Alignment:
| Q |
17 |
agtaaagcgttttaggaatccatctatgctctctaatcttcaagttgttgtcatgccctcaaagaaatgtccacgaagatacgccggaacccaatgttgt |
116 |
Q |
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| T |
16149128 |
agtaaagcgttttaggaatccatttatgctctctgatcttccagttgttgtcatgcccccaaagaaatgtccacgaagatacgccggaacccaatgttgc |
16149227 |
T |
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| Q |
117 |
ttaacttcatacaagccttttatgtgcttgtttgcttctagtttgtac |
164 |
Q |
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| T |
16149228 |
ttaacttcatacaagccttttatgtgcttatttgcttctagattgtac |
16149275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 16149251 - 16149345
Alignment:
| Q |
165 |
gtgcttatttgcttctagtttgtacttggaaacaattataatccattcttattcaaaatcatcaatattgtcaagctcgtaaagcttataaaaat |
259 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
16149251 |
gtgcttatttgcttctagattgtacttggaaacaattataatccattcttcttcgaaatcatcaatattgtcaagcttgtaaagcttataaaaat |
16149345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 23302933 - 23302786
Alignment:
| Q |
17 |
agtaaagcgttttaggaatccatctatgctctctaatcttcaagttgttgtcatgccctcaaagaaatgtccacgaagatacgccggaacccaatgttgt |
116 |
Q |
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||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23302933 |
agtaaagcgttttaggaatccatttatgctctctgatcttccagttgttgtcatgcccccaaagaaatgtccacgaagatacgccggaacccaatgttgc |
23302834 |
T |
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| Q |
117 |
ttaacttcatacaagccttttatgtgcttgtttgcttctagtttgtac |
164 |
Q |
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| T |
23302833 |
ttaacttcatacaagccttttatgtgcttatttgcttctagattgtac |
23302786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 23302810 - 23302716
Alignment:
| Q |
165 |
gtgcttatttgcttctagtttgtacttggaaacaattataatccattcttattcaaaatcatcaatattgtcaagctcgtaaagcttataaaaat |
259 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
23302810 |
gtgcttatttgcttctagattgtacttggaaacaattataatccattcttcttcaaaatcatcaatattgtcaagcttgtaaagcttatgaaaat |
23302716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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