View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18466_low_19 (Length: 288)
Name: NF18466_low_19
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 29611216 - 29611479
Alignment:
| Q |
9 |
agcacagagagaatgaaaaatgctaagtcatagtgtaaaagcatatagagaataaatatgttagacactgtagggtagaagtatatnnnnnnncttctaa |
108 |
Q |
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| T |
29611216 |
agcacaaagagaatgaaaaatgctatgtcatagtgtaaaagcatatagagaataaatatgttagacactgtagggtagaagtatataaaaaaacttctaa |
29611315 |
T |
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| Q |
109 |
ctaccttattctacctcattgtgtgaattaacattttcaactttggaacaattcaaaaaagacaatactatgtaaccaattaatgaaaattacaataaga |
208 |
Q |
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| T |
29611316 |
ctaccttattctacctcattgtgtgaattaacattttcaactttggaacaattcaaaaaagacaatactatgtaaccaattaatgaaaattacaataaga |
29611415 |
T |
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| Q |
209 |
agaaagaaatacaagccgtaattatcttctatcttaaaattaaatcttcaataattgtacaatt |
272 |
Q |
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| T |
29611416 |
agaaagaaatacaagccgtaattatcttctatcttaaaattaaatcttcaataattgtacaatt |
29611479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 29610029 - 29610086
Alignment:
| Q |
127 |
ttgtgtgaattaacattttcaactttg---gaacaattcaaaaaagacaatactatgt |
181 |
Q |
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| T |
29610029 |
ttgtgtgaattaacattttcaactttggaagaacaattcaaaaaagacaatactatgt |
29610086 |
T |
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