View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18466_low_24 (Length: 237)
Name: NF18466_low_24
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18706358 - 18706138
Alignment:
| Q |
1 |
tgcacagggtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgctttgaggc |
100 |
Q |
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| T |
18706358 |
tgcacagggtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgctttgaggc |
18706259 |
T |
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| Q |
101 |
tggaaacgaagcaggagaatggtggtgagagaagtggagaggatcctgagcaggataagctaagagcagggttgaattccacaattgtcatggagaaacc |
200 |
Q |
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| T |
18706258 |
aggaaatgaagcaggagaatggtggtgagagaagtggagaggatcctgagcaggataagctaagagcggggttgaattccacaattgtcatggagaaacc |
18706159 |
T |
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| Q |
201 |
gaataatgtggctgagaagcc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
18706158 |
gaataatgtggctgagaagcc |
18706138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 18706710 - 18706577
Alignment:
| Q |
9 |
gtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgctttgaggctggaaacg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| || ||| ||||||||| ||||||| ||||||||| |||||| |
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| T |
18706710 |
gtatcttcgtcgtgctgaggagatccgttttgtgcttgatgatggtatgccgggaccagcttctaatggggatgctgctgttactttgaggccagaaacg |
18706611 |
T |
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| Q |
109 |
aagcaggagaatggtggtgagagaagtggagagg |
142 |
Q |
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| T |
18706610 |
aagccgaagaatgatggggagagagatggagagg |
18706577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15743405 - 15743185
Alignment:
| Q |
1 |
tgcacagggtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgctttgaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15743405 |
tgcacagggtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgctttgaggc |
15743306 |
T |
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| Q |
101 |
tggaaacgaagcaggagaatggtggtgagagaagtggagaggatcctgagcaggataagctaagagcagggttgaattccacaattgtcatggagaaacc |
200 |
Q |
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| T |
15743305 |
aggaaatgaagcaggagaatggtggtgagagaagtggagaggatcctgagcaggataagctaagagcggggttgaattccacaattgtcatggagaaacc |
15743206 |
T |
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| Q |
201 |
gaataatgtggctgagaagcc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
15743205 |
gaataatgtggctgagaagcc |
15743185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 15743757 - 15743624
Alignment:
| Q |
9 |
gtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgctttgaggctggaaacg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| || ||| ||||||||| ||||||| ||||||||| |||||| |
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| T |
15743757 |
gtatcttcgtcgtgctgaggagatccgttttgtgcttgatgatggtatgccgggaccagcttctaatggggatgctgctgttactttgaggccagaaacg |
15743658 |
T |
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| Q |
109 |
aagcaggagaatggtggtgagagaagtggagagg |
142 |
Q |
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|||| | |||||| ||| |||||| |||||||| |
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| T |
15743657 |
aagccgaagaatgatggggagagagatggagagg |
15743624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 19412815 - 19412859
Alignment:
| Q |
9 |
gtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgg |
53 |
Q |
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| T |
19412815 |
gtatcttcgtcgtgcggaggagatccgtgctgtgcttgatgatgg |
19412859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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