View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18466_low_30 (Length: 201)
Name: NF18466_low_30
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 19549522 - 19549627
Alignment:
| Q |
75 |
gaacatgatttatatagttaagagtttaacggcataagttccaataatcattataatgacctaaataattggttcatggtacttggctagttgcctaaga |
174 |
Q |
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| T |
19549522 |
gaacatgatttata--gttaagagtttaacggtataagttccaataatcattataatgacctaaataattggttcatggtacttggctagttgcctaaga |
19549619 |
T |
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| Q |
175 |
gttgggga |
182 |
Q |
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|||||||| |
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| T |
19549620 |
gttgggga |
19549627 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 7201528 - 7201571
Alignment:
| Q |
16 |
tgaacaatgcataatatatacaaactctggaattcgaacccgac |
59 |
Q |
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| T |
7201528 |
tgaacaatgcataatatatgcaaagtctggagttcgaacccgac |
7201571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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