View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18466_low_5 (Length: 466)
Name: NF18466_low_5
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 20 - 458
Target Start/End: Original strand, 51852258 - 51852696
Alignment:
| Q |
20 |
aatacgtgatctatacaaagattcctgcttcagacttgcacaagaagtatcaaaagtactaagggcaatggccaacagcataaggaaaaagcataaattt |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51852258 |
aatacgtgatctatacaaagattcctgcatcagacttgcacaagaagtatcaaaagtactaagggcaatggccaacagcataaggaaaaagcataaattt |
51852357 |
T |
|
| Q |
120 |
tcccttcaaatactctcaaacaatcttaatgaagctttacaagatcttgacagtgtgttaaaatcgcaaccccaacttttactaggctcgaacaatggtc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51852358 |
tcccttcaaatactctcaaacaatcttaatgaagctttacaagatcttgacggtgtgttaaaatcgcaaccccaacttttacttggctcgaacaatggtc |
51852457 |
T |
|
| Q |
220 |
gaaatcgaacacccagaacccccaaaacccccagaactcgaaactcttacaagcttgaagaagaaagtagaatcttgctatcacgtgttaaaagtgattg |
319 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51852458 |
gaagtcgaacacccagaacccccaaaacccccagaactccaaactcttacaagcttgaagaagaaagtagaatcttgctatcacgtgttaaaagtgattg |
51852557 |
T |
|
| Q |
320 |
ttgttccccagttggaagcaaatccaaagagcatttccgagaacaaacaaaagaaggacagagacacaaggtgttgaggccacaacttagtaagattatc |
419 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51852558 |
ttgttccccagttggaagcaaatccaaagagcattcccgagaacaaacaaaagaaggacagagacacaaggtgttgaggccacaacttagtaagattatc |
51852657 |
T |
|
| Q |
420 |
atcactagccttgagttctcagaagcactgccctttgct |
458 |
Q |
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| T |
51852658 |
atcactagccttgagttctcagaagcactaccctttgct |
51852696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 24 - 376
Target Start/End: Original strand, 51862453 - 51862805
Alignment:
| Q |
24 |
cgtgatctatacaaagattcctgcttcagacttgcacaagaagtatcaaaagtactaagggcaatggccaacagcataaggaaaaagcataaattttccc |
123 |
Q |
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|||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||||| || |||| | ||||||||| |
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| T |
51862453 |
cgtgatctatacaaagattcttgcatcaaacttgcacaagaagtatcaaaagtacttagggttttggccaacagcataagaaacaagcgtcaattttccc |
51862552 |
T |
|
| Q |
124 |
ttcaaatactctcaaacaatcttaatgaagctttacaagatcttgacagtgtgttaaaatcgcaaccccaacttttactaggctcgaacaatggtcgaaa |
223 |
Q |
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|| ||| |||||| |||||||| | ||||||||||||||| ||||||| ||| |||||||||||||| || |||||||||||||||| ||| || || |
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| T |
51862553 |
ttgaaacactctcgaacaatctcagtgaagctttacaagaccttgacaatgtattaaaatcgcaaccgcagcttttactaggctcgagaaataatcaaag |
51862652 |
T |
|
| Q |
224 |
tcgaacacccagaacccccaaaacccccagaactcgaaactcttacaagcttgaagaagaaagtagaatcttgctatcacgtgttaaaagtgattgttgt |
323 |
Q |
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||||| |||| |||||||||||| |||||||| | |||| || |||| |||| ||||| | ||||||| | ||| || |||||||||||| || | |
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| T |
51862653 |
tcgaatccccataacccccaaaactcccagaacgcccaactttttcaagattgatgaagacacgagaatctcattgtcaagtattaaaagtgattattat |
51862752 |
T |
|
| Q |
324 |
tccccagttggaagcaaatccaaagagcatttccgagaacaaacaaaagaagg |
376 |
Q |
| |
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||||| || |||| ||||||||||||||| | ||| |||| |||||||||||| |
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| T |
51862753 |
tccccggtcggaaccaaatccaaagagcactcccgggaactaacaaaagaagg |
51862805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 51822350 - 51822560
Alignment:
| Q |
24 |
cgtgatctatacaaagattcctgcttcagacttgcacaagaagtatcaaaagtactaagggcaatggccaacagcataaggaaaaagcataaattttccc |
123 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || | ||||||| |
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| T |
51822350 |
cgtgatctatacaaagattcttgcatcagacttgcacaagaagtatcaaaagtgctaagggtaatggccaacagcataaggaaaaaacaccagttttccc |
51822449 |
T |
|
| Q |
124 |
ttcaaatactctcaaacaatcttaatgaagctttacaagatcttgacagtgtgttaaaatcgcaaccccaacttttactaggctcgaacaatggtcgaaa |
223 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||| ||||||| || || ||||||||||| ||||||||||||||||| | ||| |||||| |
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| T |
51822450 |
ttcaaatactctcaaacaatctcaatgaagttttacaagaccttgacaatgcattgaaatcgcaaccacaacttttactaggctcaaggaatagtcgaag |
51822549 |
T |
|
| Q |
224 |
tcgaacaccca |
234 |
Q |
| |
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|||||| |||| |
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| T |
51822550 |
tcgaaccccca |
51822560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 272 - 458
Target Start/End: Original strand, 51822598 - 51822787
Alignment:
| Q |
272 |
gcttgaagaagaaagtagaatcttgctatcacgtgttaaaagtgattgttgttccccagttggaagcaaatccaaagagcatttccgagaacaaacaaaa |
371 |
Q |
| |
|
|||||||||||||| ||| ||| ||||| || ||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||| |||| |
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| T |
51822598 |
gcttgaagaagaaacaagactctcattatcaagtattaaaagtgattgttgttccccagttggaagtaaatctaaagagcactcccgagaacaaataaaa |
51822697 |
T |
|
| Q |
372 |
gaaggacagagac---acaaggtgttgaggccacaacttagtaagattatcatcactagccttgagttctcagaagcactgccctttgct |
458 |
Q |
| |
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|||||||| ||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51822698 |
gaaggacaacgacagaagaaggttttgaggccacaacttagtaaaattatcatcactagccttgagttctcagaagcactgccctttgct |
51822787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 51408764 - 51408691
Alignment:
| Q |
73 |
aagtactaagggcaatggccaacagcataagga-aaaagcataaattttcccttcaaatactctcaaacaatct |
145 |
Q |
| |
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||||||| |||| |||||||||| |||||||| |||||||| ||||||| ||||||| ||||| ||||||||| |
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| T |
51408764 |
aagtacttagggtgatggccaacaacataaggaaaaaagcatcaattttctcttcaaagactcttaaacaatct |
51408691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 458
Target Start/End: Original strand, 51862864 - 51862902
Alignment:
| Q |
420 |
atcactagccttgagttctcagaagcactgccctttgct |
458 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||| |
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| T |
51862864 |
atcactagccttgagttctcagaagcactaccttttgct |
51862902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 2833171 - 2833134
Alignment:
| Q |
342 |
tccaaagagcatttccgagaacaaacaaaagaaggaca |
379 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |
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|
| T |
2833171 |
tccaaagatcattcccgagaacaaacaaaagaaggaca |
2833134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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