View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18466_low_6 (Length: 459)

Name: NF18466_low_6
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18466_low_6
NF18466_low_6
[»] chr2 (15 HSPs)
chr2 (18-380)||(9079786-9080152)
chr2 (21-182)||(10474111-10474274)
chr2 (21-182)||(10545099-10545258)
chr2 (40-231)||(10518493-10518679)
chr2 (27-231)||(10507306-10507505)
chr2 (39-180)||(10848757-10848897)
chr2 (60-182)||(10463575-10463695)
chr2 (28-182)||(7476521-7476671)
chr2 (39-178)||(28105303-28105442)
chr2 (28-182)||(10492728-10492876)
chr2 (39-149)||(10860661-10860774)
chr2 (39-178)||(27967281-27967420)
chr2 (38-182)||(7478686-7478826)
chr2 (130-182)||(10507523-10507573)
chr2 (142-182)||(10488770-10488810)
[»] chr5 (2 HSPs)
chr5 (84-231)||(33602569-33602711)
chr5 (21-182)||(33575337-33575495)


Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 9080152 - 9079786
Alignment:
Q  18 agatcaagtccataaaacaaagaatt----caaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgcta 113  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9080152 agatcaagtccataaaacaaagaattaattcaaggtaattcaacaattaccttatatttgtaagcacttcccatgaatactggtataaacttctccgcta 9080053  T
Q  114 tggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataaggttttggagagggggtgggtgagggagaagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9080052 tggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataaggttttggagagggggtgggtgagggagaagt 9079953  T
Q  214 aacaactagttttcatatcagaaaatgcatctgccttcataggtgcatggacaaaaaatggatttcctcaaggatcaaaccctaaaatgtaaaacaagaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9079952 aacaactagttttcatatcagaaaatgcatctgccttcataggtgcatggacaaaaaatggatttcctcaaggatcaaaccctaaaatgtaaaacaagaa 9079853  T
Q  314 taaaacatatttgaatttgttctccaacttcatctcaaaacctgaggggtaatactggtcaatatta 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9079852 taaaacatatttgaatttgttctccaacttcatctcaaaacctgaggggtaatactggtcaatatta 9079786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 10474111 - 10474274
Alignment:
Q  21 tcaagtccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggc 120  Q
    ||||| ||||| ||||||||||||||| ||||| |||| |||||||||| ||| |||||||  ||||||||| |||||||||||||   |||||||||||    
T  10474111 tcaagaccatacaacaaagaattcaagttaatttaacacttaccttatacttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggc 10474210  T
Q  121 cctacgaactgcttcct--acacacacaaaataataacaaaaagaaaactatttacaaaataag 182  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||||| ||||||| |||||    
T  10474211 cctacgaactgcttcctacacacacacacaataataacaaaaagaaaactgtttacaagataag 10474274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 10545099 - 10545258
Alignment:
Q  21 tcaagtccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggc 120  Q
    ||||| ||||| ||||||||||||||||||||| |||| ||||||||||| || |||||||  ||||||| | ||||||||| |||   |||||||||||    
T  10545099 tcaagaccatacaacaaagaattcaaggtaatttaacagttaccttatatctgaaagcactgcccatgaaaaatggtataaatttccgtgctatggtggc 10545198  T
Q  121 cctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 182  Q
    ||  ||||| |||||||||| ||||  |||||||||||||| |||||||||||||| |||||    
T  10545199 ccggcgaacagcttcctacaaacac--aataataacaaaaataaaactatttacaagataag 10545258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 40 - 231
Target Start/End: Original strand, 10518493 - 10518679
Alignment:
Q  40 aattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttcctac 139  Q
    ||||||||| ||||||||  |||||||||||||| | |||||  ||||||  | ||||||||| |||   ||||||||||||| ||||||||||||||||    
T  10518493 aattcaaggcaattcaacggttaccttatatttgaatgcactgcccatgagaaatggtataaatttccgtgctatggtggcccgacgaactgcttcctac 10518592  T
Q  140 acacacaaaataataacaaaaagaaaactatttacaaaataaggttttggagagggggtgggtgagggagaagtaacaactagttttcatat 231  Q
    ||||||  |||||||||||||||||||  ||||||||||||| | |||| | | |||  ||||| ||| |||||||||||| ||||||||||    
T  10518593 acacac--aataataacaaaaagaaaataatttacaaaataa-gatttgaaaatggg--gggtgggggcgaagtaacaactggttttcatat 10518679  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 10507306 - 10507505
Alignment:
Q  27 ccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacg 126  Q
    ||||| |||| ||||||||||| ||||||||   |||||| |||||| |||||||  |||||||||| |||||||| |||   |||||||||| || |||    
T  10507306 ccatacaacagagaattcaaggcaattcaacgggtaccttgtatttgaaagcactgcccatgaatacgggtataaatttccgtgctatggtggtccgacg 10507405  T
Q  127 aactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataaggttttggagagggggtgggtgagggagaagtaacaactagtttt 226  Q
    |||||||||||||||||||  ||||||||||| |||||||  | ||||||| ||| | |||| | | |||  ||||| |||||||||||||||| |||||    
T  10507406 aactgcttcctacacacac--aataataacaacaagaaaataacttacaaattaa-gatttgaaaatggg--gggtgggggagaagtaacaactggtttt 10507500  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 180
Target Start/End: Original strand, 10848757 - 10848897
Alignment:
Q  39 gaattcaaggtaattcaacaattaccttat---atttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttc 135  Q
    ||||||||||| |||||||  |||||||||   ||||| |||||    ||||||||||||||||||| || |  ||||||||||||||||||||||||||    
T  10848757 gaattcaaggtgattcaacgtttaccttattatatttgaaagcatcacccatgaatactggtataaatttgtgtgctatggtggccctacgaactgcttc 10848856  T
Q  136 ctacacacacaaaataataacaaaaagaaaactatttacaaaata 180  Q
    ||||||||    ||||||||||||||||||| ||||| |||||||    
T  10848857 ctacacac----aataataacaaaaagaaaattattttcaaaata 10848897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 10463575 - 10463695
Alignment:
Q  60 ttaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttcctacacacacaaaataataacaaa 159  Q
    |||||||||||||| |||||||  ||||||| | ||||||||| |||   ||||| ||||| ||||||| ||||||||||| ||||  ||||||||||||    
T  10463575 ttaccttatatttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgcttcctacaaacac--aataataacaaa 10463672  T
Q  160 aagaaaactatttacaaaataag 182  Q
    ||||||| |||||||||||||||    
T  10463673 aagaaaattatttacaaaataag 10463695  T

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Target: chr2; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 7476671 - 7476521
Alignment:
Q  28 cataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacga 127  Q
    |||| |||||||||||||||| ||||||||  |||||||||| ||| | |||||  ||||||| || |||| ||| ||||  ||||| || |||||| ||    
T  7476671 catataacaaagaattcaaggaaattcaacggttaccttatacttgaatgcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatga 7476572  T
Q  128 actgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 182  Q
    | ||||||||||||||    |||||||||||||||||||||| | ||||||||||    
T  7476571 attgcttcctacacac----aataataacaaaaagaaaactagtgacaaaataag 7476521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 28105442 - 28105303
Alignment:
Q  39 gaattcaaggtaattcaacaattaccttat---atttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttc 135  Q
    ||||||||||||||||||| ||||||||||   ||| | ||||| |  |||||||||||||||||||||||   ||||||||||||||||||||||| |     
T  28105442 gaattcaaggtaattcaactattaccttattatattggaaagcattacccatgaatactggtataaacttccgtgctatggtggccctacgaactgcgtt 28105343  T
Q  136 ctacacacacaaaataataacaaaaagaaaactatttacaaaa 178  Q
    ||  ||||||||||||||| ||| || ||||||||||| ||||    
T  28105342 ct--acacacaaaataatagcaataa-aaaactatttaaaaaa 28105303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 10492728 - 10492876
Alignment:
Q  28 cataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacga 127  Q
    |||| |||||||||||||||| ||||||||  |||||||||| ||| | |||||  ||||||| || |||| ||| || |  |||||||| |||||||||    
T  10492728 catataacaaagaattcaaggcaattcaacggttaccttatacttgaatgcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacga 10492827  T
Q  128 actgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 182  Q
    | ||||||||||||      || ||||||||||||||||||| |||| |||||||    
T  10492828 attgcttcctacac------aacaataacaaaaagaaaactagttaccaaataag 10492876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 10860661 - 10860774
Alignment:
Q  39 gaattcaaggtaattcaacaattaccttatatttgtaagca---cttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttc 135  Q
    ||||||||||||||||||   |||||||||||||| |||||   |   ||||||||||||||||||| |||   ||||||||| ||||||||||||||||    
T  10860661 gaattcaaggtaattcaatggttaccttatatttgaaagcatagccacccatgaatactggtataaatttccgtgctatggtgaccctacgaactgcttc 10860760  T
Q  136 ctacacacacaaaa 149  Q
    ||||||| ||||||    
T  10860761 ctacacagacaaaa 10860774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 27967281 - 27967420
Alignment:
Q  39 gaattcaaggtaattcaacaattaccttat---atttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttc 135  Q
    ||||||||||||||||||| ||||||||||   ||| | ||| | |  |||||||| ||||||||||||| |  ||||||||||||||||||||||| |     
T  27967281 gaattcaaggtaattcaactattaccttattatattggaaagaattacccatgaatgctggtataaacttgtgtgctatggtggccctacgaactgcgtt 27967380  T
Q  136 ctacacacacaaaataataacaaaaagaaaactatttacaaaa 178  Q
    ||  ||||||||||||||| ||| || ||||||||||| ||||    
T  27967381 ct--acacacaaaataatagcaataa-aaaactatttaaaaaa 27967420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 7478826 - 7478686
Alignment:
Q  38 agaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttcct 137  Q
    ||||||||||| |  |||||  ||||||||| || | |||||||  ||||||| || |||||||| ||    ||| |||| |||||| ||||||||||||    
T  7478826 agaattcaaggcagatcaacggttaccttattttcggaagcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgcttcct 7478727  T
Q  138 acacacacaaaataataacaaaaagaaaactatttacaaaataag 182  Q
    |||||||    ||||||||||||||||||||| ||||||||||||    
T  7478726 acacaca----ataataacaaaaagaaaactagttacaaaataag 7478686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 10507523 - 10507573
Alignment:
Q  130 tgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 182  Q
    ||||||||||||| ||||  |||||||||||||||| |||| |||||||||||    
T  10507523 tgcttcctacacatacaa--taataacaaaaagaaacctatatacaaaataag 10507573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 10488770 - 10488810
Alignment:
Q  142 acacaaaataataacaaaaagaaaactatttacaaaataag 182  Q
    ||||| |||||||||| ||||||||||| ||||||||||||    
T  10488770 acacacaataataacagaaagaaaactagttacaaaataag 10488810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 84 - 231
Target Start/End: Original strand, 33602569 - 33602711
Alignment:
Q  84 ccatgaatactggtataaacttctccgctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataagg 183  Q
    ||||||||| |||||||||||||   |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||| |||| |    
T  33602569 ccatgaataatggtataaacttccgtgctatggtggccctacaaactgcttcctacacacac--aataataacaaaaagaaaactatttacaagataa-g 33602665  T
Q  184 ttttggagagggggtgggtgagggagaagtaacaactagttttcatat 231  Q
     |||| |||   || ||||| ||| |||||||||||| ||||||||||    
T  33602666 atttgtaga--tggcgggtgggggcgaagtaacaactggttttcatat 33602711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 33575495 - 33575337
Alignment:
Q  21 tcaagtccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggc 120  Q
    ||||| ||||||||||  ||||||||| ||||| |||  ||||||||||||||  ||||||  ||||||||| |||||||||| ||   || ||| ||||    
T  33575495 tcaagaccataaaacatggaattcaagttaatttaacgcttaccttatatttgagagcactgcccatgaataatggtataaacctccgtgcaatgatggc 33575396  T
Q  121 cctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 182  Q
    |||| ||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||    
T  33575395 cctatgaactgcttcctacacacac--aataataac-aaaagaaaactatttacaagataag 33575337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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