View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18466_low_9 (Length: 391)
Name: NF18466_low_9
Description: NF18466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18466_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 37316788 - 37317157
Alignment:
| Q |
10 |
agtgagatgaaggttctcattgcctaattgagtaatgtttcttaacttttagaagcatac-----aacaaaaggtttgtactttgtacataaatcatcta |
104 |
Q |
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| T |
37316788 |
agtgagatgaaggttctcattgcctaattgagtaatgtttcttaacttttagaagcatacaatacaacaaaaggtttgtactttgtacataaatcatcta |
37316887 |
T |
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| Q |
105 |
ttgcagctgggaagtttttaccttgtgttattgcttcaatttgtaaacactaaagtacacactttatataattaaatatttattgtataaagttatcacc |
204 |
Q |
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| T |
37316888 |
ttgcagctgggaagtttttaccttgtgttattgcttcaatttgtaaacactaatgtacacactttatataattaaatatttattttataatgttatcacc |
37316987 |
T |
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| Q |
205 |
acaataatctttgtcaaaaaataattaacacggtgtcatattatcagaacctccgtatggtaaaagattgctaggacatttga---------------tt |
289 |
Q |
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| T |
37316988 |
acaataatctttgtcaaaaaataattaacacggtgtcatattatcagaacctccgtatggtaaaagattgctaggacatttgatatgataaatgtgagtt |
37317087 |
T |
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| Q |
290 |
taaatccgcaattacaatcctcttagccttctagtttggggcttcacattggtttaatgcagtcaataag |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37317088 |
taaatccgcaattacaatcctcttagccttctagtttggggcttcacattggtttaatgcagtcaataag |
37317157 |
T |
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