View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18467_high_13 (Length: 478)

Name: NF18467_high_13
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18467_high_13
NF18467_high_13
[»] chr6 (13 HSPs)
chr6 (18-288)||(16281228-16281498)
chr6 (436-478)||(22868499-22868541)
chr6 (435-478)||(9290685-9290728)
chr6 (27-120)||(16282849-16282942)
chr6 (434-478)||(21862725-21862769)
chr6 (434-478)||(33424008-33424052)
chr6 (38-93)||(16281614-16281668)
chr6 (63-106)||(16282405-16282448)
chr6 (435-478)||(18984534-18984577)
chr6 (63-120)||(16281769-16281826)
chr6 (67-120)||(16283213-16283266)
chr6 (390-434)||(10741772-10741816)
chr6 (58-90)||(16282021-16282053)
[»] chr7 (8 HSPs)
chr7 (387-474)||(6841471-6841550)
chr7 (388-478)||(2628274-2628356)
chr7 (435-478)||(6840637-6840680)
chr7 (435-478)||(15614281-15614324)
chr7 (436-478)||(44337385-44337427)
chr7 (435-478)||(21814464-21814506)
chr7 (436-478)||(46963095-46963137)
chr7 (436-478)||(46964449-46964491)
[»] chr3 (6 HSPs)
chr3 (435-478)||(50294693-50294736)
chr3 (435-478)||(16463004-16463046)
chr3 (435-478)||(18088165-18088207)
chr3 (436-478)||(42531327-42531369)
chr3 (436-477)||(814419-814460)
chr3 (434-475)||(50297496-50297537)
[»] chr1 (4 HSPs)
chr1 (435-478)||(15630177-15630220)
chr1 (390-478)||(15629378-15629458)
chr1 (435-478)||(28665017-28665059)
chr1 (436-478)||(6696053-6696095)
[»] chr8 (3 HSPs)
chr8 (436-478)||(20241063-20241105)
chr8 (436-478)||(20251962-20252004)
chr8 (436-478)||(43615496-43615538)
[»] chr4 (4 HSPs)
chr4 (436-478)||(16871689-16871731)
chr4 (435-478)||(37945521-37945564)
chr4 (436-478)||(16543398-16543440)
chr4 (436-476)||(16869544-16869584)
[»] scaffold0002 (1 HSPs)
scaffold0002 (388-478)||(406276-406358)
[»] chr2 (5 HSPs)
chr2 (434-478)||(32291191-32291235)
chr2 (435-470)||(32276976-32277011)
chr2 (435-478)||(38583522-38583565)
chr2 (436-478)||(8985612-8985654)
chr2 (436-478)||(8986965-8987007)
[»] scaffold0007 (1 HSPs)
scaffold0007 (435-472)||(14290-14327)
[»] chr5 (1 HSPs)
chr5 (391-478)||(6643359-6643443)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 16281498 - 16281228
Alignment:
Q  18 tttcaaagccggcgacacagtcaaaaattcaaacacgtaaagcatatagaatcacaattttcagagtaaaatgaaatgctaacagtaaccaacgaaaatc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16281498 tttcaaagccggcgacacagtcaaaaattcaaacacgtaaagcacatagaatcacaattgtcagagtaaaatgaaatgctaacagtaaccaacgaaaatc 16281399  T
Q  118 aactaaaaaatctacacgaatatctaagcacattaactcttcacaaaacgtaaactaaaaaccgtaacgaacctcctcgcaatttcgaaattcggcaacg 217  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16281398 aactaaaaaatctaaacgaatatcaaagcacattaactcttcacaaaacgtaaactaaaaaccgtaacgaacctcctcgcaatttcgaaattcggcaacg 16281299  T
Q  218 gaggaatcacgatctggattcaaaaccgttagatcgttctcttcgacgctgattcggtgagggagaaccgc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16281298 gaggaatcacgatctggattcaaaaccgttagatcgttctcttcgacgctgatttggtgagggagaaccgc 16281228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 22868499 - 22868541
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  22868499 tttatattagtaagttagagtccattaggttttattatatatt 22868541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 9290728 - 9290685
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||| ||||||||||||| |||||||||||||||||||    
T  9290728 ctttatattaataagttagagtccattaggttttattatatatt 9290685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 16282942 - 16282849
Alignment:
Q  27 cggcgacacagtcaaaaattcaaacacgtaaagcatatagaatcacaattttcagagtaaaatgaaatgctaacagtaaccaacgaaaatcaac 120  Q
    |||| ||||| ||||| ||||||| |||   |||| |||||||| ||||||||||||||||||||||||  ||||||  | ||| |||||||||    
T  16282942 cggcaacacaatcaaatattcaaaaacgacgagcacatagaatctcaattttcagagtaaaatgaaatggcaacagtttctaacaaaaatcaac 16282849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 478
Target Start/End: Original strand, 21862725 - 21862769
Alignment:
Q  434 tctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||| |||||||||| | |||||||||||||||||||    
T  21862725 tctttatattagcaagttagagtgcattaggttttattatatatt 21862769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 478
Target Start/End: Complemental strand, 33424052 - 33424008
Alignment:
Q  434 tctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||    
T  33424052 tctttatattagtaagttaaagttcattaggttttattatatatt 33424008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 16281668 - 16281614
Alignment:
Q  38 tcaaaaattcaaacacgtaaagcatatagaatcacaattttcagagtaaaatgaaa 93  Q
    ||||||||||||||||||||| || |||||||| ||||||||| ||| ||||||||    
T  16281668 tcaaaaattcaaacacgtaaatcacatagaatctcaattttca-agtgaaatgaaa 16281614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 16282448 - 16282405
Alignment:
Q  63 atagaatcacaattttcagagtaaaatgaaatgctaacagtaac 106  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||    
T  16282448 atagaatctcaattttcagagtgaaatgtaatgctaacagtaac 16282405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 18984534 - 18984577
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||||||||||||| | ||| |||||||||||||||    
T  18984534 ctttatattagtaagttagagtacattatgttttattatatatt 18984577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 16281826 - 16281769
Alignment:
Q  63 atagaatcacaattttcagagtaaaatgaaatgctaacagtaaccaacgaaaatcaac 120  Q
    |||||||| ||||||||||||  ||||||||  |||||||||||  ||||||||||||    
T  16281826 atagaatctcaattttcagagcgaaatgaaaatctaacagtaacatacgaaaatcaac 16281769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 16283266 - 16283213
Alignment:
Q  67 aatcacaattttcagagtaaaatgaaatgctaacagtaaccaacgaaaatcaac 120  Q
    |||| ||||||||||||  |||||||||||||||| || | |||||||||||||    
T  16283266 aatctcaattttcagagcgaaatgaaatgctaacaataccgaacgaaaatcaac 16283213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 10741772 - 10741816
Alignment:
Q  390 tgttagataataaaatatcgggtttaagttattgagcctttatat 434  Q
    |||||||||||||||||| ||| ||||||||||| | ||||||||    
T  10741772 tgttagataataaaatattgggcttaagttattgggtctttatat 10741816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 16282053 - 16282021
Alignment:
Q  58 agcatatagaatcacaattttcagagtaaaatg 90  Q
    |||| ||||||||||||||||||||||||||||    
T  16282053 agcacatagaatcacaattttcagagtaaaatg 16282021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 6841550 - 6841471
Alignment:
Q  387 cattgttagataataaaatatcgggtttaagttattgagcctttatatctttatattagtaagttagagtccgttaggttttattata 474  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||        |||||||||||||||||||| ||||||||||    
T  6841550 cattgttagataataaaatatcggacttaagttattgggcctttatatc--------agtaagttagagtccgttagattttattata 6841471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 478
Target Start/End: Complemental strand, 2628356 - 2628274
Alignment:
Q  388 attgttagataataaaatatcgggtttaagttattgagcctttatatctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||||||| ||| | | |||||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||    
T  2628356 attgttagataataaagtattgagcttaagttattgag--------tctttatattagtaagttagagtccattaggttttattatatatt 2628274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 6840680 - 6840637
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  6840680 ctttatatcagtaagttagagtccgttaggttttattatatatt 6840637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 15614324 - 15614281
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||| |||||||||||| |||||||||||||||||||    
T  15614324 ctttatattagcaagttagagtccattaggttttattatatatt 15614281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 44337385 - 44337427
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  44337385 tttatagtagtaagttagagtccgttagattttattatatatt 44337427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 21814464 - 21814506
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  21814464 ctttatattagtaagttagagtccattagg-tttattatatatt 21814506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 478
Target Start/End: Complemental strand, 46963137 - 46963095
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||||||||| |||| |||||||| |||||    
T  46963137 tttatattagtaagttagagtccattagattttattagatatt 46963095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 478
Target Start/End: Complemental strand, 46964491 - 46964449
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||| |||||||||| |||| ||||||||||||||    
T  46964491 tttatattagtacgttagagtccattagattttattatatatt 46964449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 50294693 - 50294736
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||| ||||||||||||| |||||||||||||||||||    
T  50294693 ctttatattaataagttagagtccattaggttttattatatatt 50294736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 16463004 - 16463046
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  16463004 ctttatattagtaagttagagtccattagg-tttattatatatt 16463046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 18088207 - 18088165
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  18088207 ctttatattagtaagttagagtccattagg-tttattatatatt 18088165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 42531327 - 42531369
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||| ||| | |||||||||||||||||||    
T  42531327 tttatattagtaagttaaagttcattaggttttattatatatt 42531369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 477
Target Start/End: Complemental strand, 814460 - 814419
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatat 477  Q
    ||||||||||||||||||||||| ||||||||  ||||||||    
T  814460 tttatattagtaagttagagtccattaggtttcgttatatat 814419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 475
Target Start/End: Original strand, 50297496 - 50297537
Alignment:
Q  434 tctttatattagtaagttagagtccgttaggttttattatat 475  Q
    ||||||||||||||||||||||| | ||| ||||||||||||    
T  50297496 tctttatattagtaagttagagttcattatgttttattatat 50297537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 15630220 - 15630177
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||||||||||||||  |||||||||||||||||||    
T  15630220 ctttatattagtaagttagagtctattaggttttattatatatt 15630177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 478
Target Start/End: Complemental strand, 15629458 - 15629378
Alignment:
Q  390 tgttagataataaaatatcgggtttaagttattgagcctttatatctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||||||||| ||| |||||||||||         | |||||||||||||||||||||| | |||| ||||||||||||||    
T  15629458 tgttagataataaaatattgggcttaagttattg--------gacctttatattagtaagttagagttcattagattttattatatatt 15629378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 28665017 - 28665059
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  28665017 ctttatattagtaagttagagtccattagg-tttattatatatt 28665059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 6696053 - 6696095
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||||||||| |||| |||||||| |||||    
T  6696053 tttatattagtaagttagagtccattagattttattaaatatt 6696095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 20241063 - 20241105
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  20241063 tttatagtagtaagttagagtccgttagattttattatatatt 20241105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 478
Target Start/End: Complemental strand, 20252004 - 20251962
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  20252004 tttatagtagtaagttagagtccgttagattttattatatatt 20251962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 43615496 - 43615538
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  43615496 tttatattagtaagttagagtccattagattttattatatatt 43615538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 16871689 - 16871731
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  16871689 tttatattagtaagttagagtccattagattttattatatatt 16871731  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 37945521 - 37945564
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||||||||||||||| |||  ||||||||||||||    
T  37945521 ctttatattagtaagttagagtccattaaattttattatatatt 37945564  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 16543398 - 16543440
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||||||| | ||| |||||||||||||||    
T  16543398 tttatattagtaagttagagttcattaagttttattatatatt 16543440  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 476
Target Start/End: Original strand, 16869544 - 16869584
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatata 476  Q
    ||||||||||||||||||||| | |||| ||||||||||||    
T  16869544 tttatattagtaagttagagttcattagattttattatata 16869584  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 478
Target Start/End: Complemental strand, 406358 - 406276
Alignment:
Q  388 attgttagataataaaatatcgggtttaagttattgagcctttatatctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    |||||||||||||||| |||  |||||||||||||| ||||||||||        ||| |||||||||||| ||| |||||||||||||||    
T  406358 attgttagataataaagtattaggtttaagttattgggcctttatat--------tagcaagttagagtcctttaagttttattatatatt 406276  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 478
Target Start/End: Original strand, 32291191 - 32291235
Alignment:
Q  434 tctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||    
T  32291191 tctttatattagtaagttagagtccattaagatttattatatatt 32291235  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 470
Target Start/End: Original strand, 32276976 - 32277011
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttat 470  Q
    |||||||||||||||||||||||| |||||||||||    
T  32276976 ctttatattagtaagttagagtccattaggttttat 32277011  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 38583565 - 38583522
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||    
T  38583565 ctttatattagtaagttagaacccgttagattttattatatatt 38583522  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 8985612 - 8985654
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||    
T  8985612 tttatattagtaagttaaagtccattagattttattatatatt 8985654  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 8986965 - 8987007
Alignment:
Q  436 tttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||||||||||||| |||  ||||||||||||||    
T  8986965 tttatattagtaagttagagtccattaaattttattatatatt 8987007  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Complemental strand, 14327 - 14290
Alignment:
Q  435 ctttatattagtaagttagagtccgttaggttttatta 472  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  14327 ctttatattagtaagttagagtacgttatgttttatta 14290  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 478
Target Start/End: Original strand, 6643359 - 6643443
Alignment:
Q  391 gttagataataaaatatcgggtttaagttattgagcctttatatctttatattagtaagttagagtccgttaggttttattatatatt 478  Q
    ||||||||||||| ||| ||| ||||||||||| | | ||||||   |||||||||||| |||||||  |||  ||||||||||||||    
T  6643359 gttagataataaagtattgggcttaagttattgggtcattatat---tatattagtaagatagagtcaattaaattttattatatatt 6643443  T

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