View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_high_15 (Length: 478)
Name: NF18467_high_15
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 5536422 - 5536691
Alignment:
| Q |
11 |
cagagacagggtagagtgccacagtaacacccgaaaagagtccagctcccactacatagtattttgttttatctaacctacagaaaacatacacgtgaac |
110 |
Q |
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| T |
5536422 |
cagagacagggtagagtgccacagtaacacccgaaaagagtccagctcccactacatagtattttattttatctaacctacagaaaacatacacgtgaac |
5536521 |
T |
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| Q |
111 |
ataataaggataaggagcttcacaatgcttagttcattataagcactatnnnnnnnntgttgatggcaagccaatgcaattcattttcaacccccacaag |
210 |
Q |
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| T |
5536522 |
ataataaggataaggagcttcacaatgcttagttcattataagcactataaaaaaaatgttgatggcaagccaatgcaattcattttcaacccccacaag |
5536621 |
T |
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| Q |
211 |
atctaccttccacagattatttgaacatataagaataaaatagaaaaagggaagtggggcatcaaaaatt |
280 |
Q |
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| T |
5536622 |
atctaccttccacagattatttgaacatataagaataaaatagaaaaagggaagtggggcatcgaaaatt |
5536691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 310 - 460
Target Start/End: Original strand, 5536721 - 5536870
Alignment:
| Q |
310 |
aatctgaactatttcaatcaatcttttaattgagattgttattgcagttgcaattacttatgtagaaaaaattacggnnnnnnntattaataacaatccc |
409 |
Q |
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| T |
5536721 |
aatctgaactatttcaatcaatcttttaattgcgattgttattgcagttgcaattacttatgtagaaaaaattacgg-aaaaaatattaataacaatccc |
5536819 |
T |
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| Q |
410 |
caccaatatctagcttccacagatgatttgaacatataagaatacataaaa |
460 |
Q |
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| T |
5536820 |
caccaatatctagcttccacagatgatttgaacatataagaatacataaaa |
5536870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 5536622 - 5536658
Alignment:
| Q |
417 |
atctagcttccacagatgatttgaacatataagaata |
453 |
Q |
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| T |
5536622 |
atctaccttccacagattatttgaacatataagaata |
5536658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 5536827 - 5536863
Alignment:
| Q |
211 |
atctaccttccacagattatttgaacatataagaata |
247 |
Q |
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| T |
5536827 |
atctagcttccacagatgatttgaacatataagaata |
5536863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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