View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18467_high_16 (Length: 466)
Name: NF18467_high_16
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 23 - 452
Target Start/End: Complemental strand, 48950745 - 48950316
Alignment:
| Q |
23 |
ccggggacacaaaccagatattcttttcctctctgaaacgttggctaatacacgaagcatggaaaatattcgagtcatgttgggatatgactcatgctta |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48950745 |
ccggggacacaaaccagatattcttttcctctctgaaacgttggctaatacacgaagcatggaaaatattcgtgtcatgttgggatatgactcatgctta |
48950646 |
T |
|
| Q |
123 |
gcagttgatgtggaaggcaggagtggtgggctggcagtgtttgggaaagatgtttctaattgtcgtgtgttaaattactctcgaaatttcattaatatga |
222 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48950645 |
gcagttgatgtggtaggcaggagtggtgggctggcagtgttttggaaagatgtttctaattgtcgtgtgttaaattactctcgaaatttcattaatatga |
48950546 |
T |
|
| Q |
223 |
ttgtggaggataaagaagctggtgattggagattaacttgttattatggctttcctgaacgtgctcgtagtcgtgatgcttgggatttacttcgggagtt |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48950545 |
ttgtggaggataaagaagctggtgattggagattaacttattattatcgctttcctgaacgtgctcgtagtcgtgatgcttgggatttacttcgggagtt |
48950446 |
T |
|
| Q |
323 |
gcgggatatgtcatctcttccgtggtgtatcattggtgactttaatgacttgttgtctcaacaagacaagtctggtattcatcctcatcctaattggttg |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48950445 |
gcgggatatgtcatctcttccgtggtgtatcattggggactttaatgacttgttgtctcaacaagacaagtctggtattcatcctcatcctaattggttg |
48950346 |
T |
|
| Q |
423 |
tgtatgggtttccgtgaagcggttgatgat |
452 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
48950345 |
tgtatgggtttccgtgaagtggttgatgat |
48950316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 23 - 452
Target Start/End: Complemental strand, 51263300 - 51262872
Alignment:
| Q |
23 |
ccggggacacaaaccagatattcttttcctctctgaaacgttggctaatacacgaagcatggaaaatattcgagtcatgttgggatatgactcatgctta |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
51263300 |
ccggggacacaaaccagacattcttttcctctctgaaacgttggctaatacacgaagcatgaaaaatatatgtgtcatgttgggatataactcatgctta |
51263201 |
T |
|
| Q |
123 |
gcagttgatgtggaaggcaggagtggtgggctggcagtgtttgggaaagatgtttctaattgtcgtgtgttaaattactctcgaaatttcattaatatga |
222 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51263200 |
gcagttgatgtggaaggcatgagtggtgg-ctggcagtgttttggaaagatgtttctaattgtcgtgtgttaaattactctcgaaatttcattaatatga |
51263102 |
T |
|
| Q |
223 |
ttgtggaggataaagaagctggtgattggagattaacttgttattatggctttcctgaacgtgctcgtagtcgtgatgcttgggatttacttcgggagtt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |||||||||| ||||||||||||||||| |
|
|
| T |
51263101 |
ttgtggaggataaagaagctggtgattggagattaacttgttattatggctttcttgaacgtgttcgtcgttgtgatgcttgagatttacttcgggagtt |
51263002 |
T |
|
| Q |
323 |
gcgggatatgtcatctcttccgtggtgtatcattggtgactttaatgacttgttgtctcaacaagacaagtctggtattcatcctcatcctaattggttg |
422 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51263001 |
gcgggatatgtcatctcttccgtggtggatcattggggactttaatgacttgttgtctcaacaagacaagtctggtattcatcctcatcctaattggttg |
51262902 |
T |
|
| Q |
423 |
tgtatgggtttccgtgaagcggttgatgat |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51262901 |
tgtatgggtttccgtgaagcggttgatgat |
51262872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 27 - 452
Target Start/End: Original strand, 7123559 - 7123984
Alignment:
| Q |
27 |
ggacacaaaccagatattcttttcctctctgaaacgttggctaatacacgaagcatggaaaatattcgagtcatgttgggatatgactcatgcttagcag |
126 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||||||| ||||||||||||||||||| || | ||||||||||||||||| ||||||||||||| |
|
|
| T |
7123559 |
ggacacaaaccaaacattcttttcctatctgaaacgttggctactacacgaagcatggaaaatgtttgtgtcatgttgggatatgattcatgcttagcag |
7123658 |
T |
|
| Q |
127 |
ttgatgtggaaggcaggagtggtgggctggcagtgtttgggaaagatgtttctaattgtcgtgtgttaaattactctcgaaatttcattaatatgattgt |
226 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
7123659 |
ttgatgtggaatgcaggagcggtgggctggcagtgttttggaaagatgtttctaattgtcgtgtgttaaattactcttgaaatttcattaatctgattgt |
7123758 |
T |
|
| Q |
227 |
ggaggataaagaagctggtgattggagattaacttgttattatggctttcctgaacgtgctcgtagtcgtgatgcttgggatttacttcgggagttgcgg |
326 |
Q |
| |
|
| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || || |
|
|
| T |
7123759 |
gaatgataaagaagctggtgattggagattgacttgttattatggctttcctgaacgtgctcgtcgtcgtgatgcttgagatttacttcgggagctgtgg |
7123858 |
T |
|
| Q |
327 |
gatatgtcatctcttccgtggtgtatcattggtgactttaatgacttgttgtctcaacaagacaagtctggtattcatcctcatcctaattggttgtgta |
426 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
7123859 |
gatatgtcatctattctgtggtgtatcattggggactttaatgacttgttgtctcaacaagacaaaactggtattcatcctcatcctaatttgttgtgta |
7123958 |
T |
|
| Q |
427 |
tgggtttccgtgaagcggttgatgat |
452 |
Q |
| |
|
||||||| |||||||||||||||||| |
|
|
| T |
7123959 |
tgggttttcgtgaagcggttgatgat |
7123984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 23 - 452
Target Start/End: Complemental strand, 43321845 - 43321418
Alignment:
| Q |
23 |
ccggggacacaaaccagatattcttttcctctctgaaacgttggctaatacacgaagcatggaaaatattcgagtcatgttgggatatgactcatgctta |
122 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||||||||||||||||||||| |||| |||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
43321845 |
ccggggacacaaaccagacattcttttcttatctgaaacgttggctaatacatgaagtatggaaaatattcgtgtaatgttgggatatgattcatgctta |
43321746 |
T |
|
| Q |
123 |
gcagttgatgtggaaggcaggagtggtgggctggcagtgtttgggaaagatgtttctaattgtcgtgtgttaaattactctcgaaatttcattaatatga |
222 |
Q |
| |
|
||||||||||||||||||||||| | || ||| |||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
43321745 |
gcagttgatgtggaaggcaggagcagaggactgacagtgttttggaaagatgattctaattgt---gtgttaaactactctcgaaatttcatcaatctga |
43321649 |
T |
|
| Q |
223 |
ttgtggaggataaagaagctggtgattggagattaacttgttattatggctttcctgaacgtgctcgtagtcgtgatgcttgggatttacttcgggagtt |
322 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43321648 |
ttgtggaggatagagaagctggtgactggagattaacttgttattatggctttcctgaacgtgcccgtcgtcgtgatgcttgggatttacttcgggagtt |
43321549 |
T |
|
| Q |
323 |
gcgggatatgtcatctcttccgtggtgtatcattggtgactttaatgacttgttgtctcaacaagacaagtctggtattcat-cctcatcctaattggtt |
421 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
43321548 |
gcgggatatgaaatctctttcgtggtgtatcataggggactttaatgacttgttgtcgcaacaagacaaagctggtattcatccctcaccctaattggtt |
43321449 |
T |
|
| Q |
422 |
gtgtatgggtttccgtgaagcggttgatgat |
452 |
Q |
| |
|
|||||| ||||| | ||||||||||||||| |
|
|
| T |
43321448 |
gtgtataggttttctggaagcggttgatgat |
43321418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 25 - 352
Target Start/End: Original strand, 24602043 - 24602369
Alignment:
| Q |
25 |
ggggacacaaaccagatattcttttcctctctgaaacgttggctaatacacgaagcatggaaaatattcgagtcatgttgggatatgactcatgcttagc |
124 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||| ||||||||||| ||||| ||||||||||| | ||||||||||||||||| |||| |||| |
|
|
| T |
24602043 |
ggggtcacaaaccagacattcttttcctatctgaaacattggctaatacgcgaaggatggaaaatatatgtgtcatgttgggatatgattcataactagc |
24602142 |
T |
|
| Q |
125 |
agttgatgtggaaggcaggagtggtgggctggcagtgtttgggaaagatgtttctaattgtcgtgtgttaaattactctcgaaatttcattaatatgatt |
224 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||| | ||| |
|
|
| T |
24602143 |
tgttgatgtggaaggcaggagcggtgggctgacaatgttttggaaagatgtttctaattatcgtgtg-taaattactctcaaaatttcattaatttaatt |
24602241 |
T |
|
| Q |
225 |
gtggaggataaagaagctggtgattggagattaacttgttattatggctttcctgaacgtgctcgtagtcgtgatgcttgggatttacttcgggagttgc |
324 |
Q |
| |
|
|||| ||||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||| ||||||||| || ||||| |
|
|
| T |
24602242 |
gtgggggatagagacgctcgtgattggagattaactttttattatggctttcctgaacgtgcctgtcatcgcgatgcttgagatttactttggtagttgt |
24602341 |
T |
|
| Q |
325 |
gggatatgtcatctcttccgtggtgtat |
352 |
Q |
| |
|
||||||||||||||||||| || ||||| |
|
|
| T |
24602342 |
gggatatgtcatctcttccatgttgtat |
24602369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 24 - 452
Target Start/End: Original strand, 27264977 - 27265403
Alignment:
| Q |
24 |
cggggacacaaaccagatattcttttcctctctgaaacgttggctaatacacgaagcatggaaaatattcgagtcatgttgggatatgactcatgcttag |
123 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||| |||||||| | | ||||||||||||||| |||||| ||| |
|
|
| T |
27264977 |
cggggacacaaaccatgcattcttttcctatttgaaacgttggctaatacacgaatcatg-aaaatatttgtgccatgttgggatatgattcatgcctag |
27265075 |
T |
|
| Q |
124 |
cagttgatgtggaaggcaggagtggtgggctggcagtgtttgggaaagatgtttctaattgtcgtgtgttaaattactctcgaaatttcattaatatgat |
223 |
Q |
| |
|
| ||||| |||||||||| ||| |||||||| |||||||| |||| ||| || ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27265076 |
cggttgaagtggaaggcatgagcagtgggctgacagtgttttggaa-gatattgctaattgtcgtgtgttaaattactctcgaaatttcattaatctgat |
27265174 |
T |
|
| Q |
224 |
tgtggaggataaagaagctggtgattggagattaacttgttattatggctttcctgaacgtgctcgtagtcgtgatgcttgggatttacttcgggagttg |
323 |
Q |
| |
|
| ||||||||| ||||||| |||||| ||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||| ||| | |
|
|
| T |
27265175 |
tatggaggatagagaagctagtgattagagattaacttgttattatggttttgctgaacgtgcacgtcatcgtgatgcttgggatttacttcgagagcta |
27265274 |
T |
|
| Q |
324 |
cgggatatgtcatctcttccgtggtgtatcattggtgactttaatgacttgttgtctcaacaagacaagtctggtattcatcctcatcctaattggttgt |
423 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
27265275 |
cgggatatatcatcactttcgtggtgtatcattggggactttaatgatttgttgtctcaacaacacaaagctggtattcatcatcatcctaattggttgt |
27265374 |
T |
|
| Q |
424 |
gtatgggtttccgtgaagcggttgatgat |
452 |
Q |
| |
|
|||| ||||||||||||| |||||||| |
|
|
| T |
27265375 |
gtattagtttccgtgaagcaattgatgat |
27265403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 1046129 - 1046080
Alignment:
| Q |
226 |
tggaggataaagaagctggtgattggagattaacttgttattatggcttt |
275 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
1046129 |
tggaggatagagaagctggtaattggagattaacgtgttattatggcttt |
1046080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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