View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_high_41 (Length: 250)
Name: NF18467_high_41
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 26735552 - 26735738
Alignment:
| Q |
1 |
aacataagtttcacaaatgcaggttaaggtcctctttgattctgttcttaatttttcgtcttttcaaatggaaacaaacttctaaacaaagacttattga |
100 |
Q |
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| T |
26735552 |
aacataagtttcacaaatgcaggttaatgtcctctttgattctgttcttaatttttcgtcttttcaaatggaaacaaacttctaaacaaagacttattga |
26735651 |
T |
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| Q |
101 |
aagaagataaaattgaatagaatttatctacgagttttcttttatgaagttaggcatgttgagagttttttaaaccagtccaatcct |
187 |
Q |
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| T |
26735652 |
aagaagataaaattgaatagaatttatctacgagttttcttttatgaagttaggcatgttgagagttttttaaaccagtccaatcct |
26735738 |
T |
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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 23437926 - 23438008
Alignment:
| Q |
1 |
aacataagtttcacaaatgcaggttaaggtcctctttgattctgttcttaatttttcgtcttttcaaatggaaacaaacttct |
83 |
Q |
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|||| ||||| |||||||||||||||||| |||||||| || | ||||||||||||||||| ||||||||||||||||||||| |
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| T |
23437926 |
aacagaagttccacaaatgcaggttaagggcctctttggttgtattcttaatttttcgtctattcaaatggaaacaaacttct |
23438008 |
T |
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