View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_high_42 (Length: 250)
Name: NF18467_high_42
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_high_42 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 34866112 - 34866350
Alignment:
| Q |
12 |
atgaaccgctactaatggtcaactctgtataagatactaaacccctactgtgaatagaggaaagacacattcaactatatatcaatatttatctgtagaa |
111 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34866112 |
atgacccgctactaatggtcaactctgtatacgatactaaacccctactgtgaatagaggaaagacacgttcaactatatatcaatatttatctgtagaa |
34866211 |
T |
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| Q |
112 |
ccagcaggtaatttataaaagcaatgtaactcctgcatagcacaaggttttattgctttatatatttctaataggaataagtaatctcgtattcgataag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866212 |
ccagcaggtaatttataaaagcaatgtaactcctgcatagcacaaggttttattgctttatatatttctaataggaataagtaatctcgtattcgataag |
34866311 |
T |
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| Q |
212 |
tattgaagcacttgcaaaaccggctacactacaaagctt |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
34866312 |
tattgaagcacttgcaaaaccggctacactacaaagctt |
34866350 |
T |
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