View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18467_high_45 (Length: 242)

Name: NF18467_high_45
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18467_high_45
NF18467_high_45
[»] chr8 (5 HSPs)
chr8 (1-242)||(20157846-20158097)
chr8 (1-242)||(20199373-20199624)
chr8 (1-70)||(38226813-38226882)
chr8 (81-142)||(38226906-38226967)
chr8 (167-242)||(38227360-38227432)
[»] chr7 (1 HSPs)
chr7 (1-242)||(44283885-44284136)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 20157846 - 20158097
Alignment:
Q  1 ataaatatcttataatatctgaattctcaaagtatcttaaattatttcttacttacaattagcttctgtannnnnnnnatat----------ttgcttct 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||          ||||||||    
T  20157846 ataaatatcttataatatctgaattctcaaagtatcttaaattatttcttacttacaattagcttctgtattttttttatatactctgtaatttgcttct 20157945  T
Q  91 ttatttgattagaattataaatctagtttatcaagttgtggttaatatttagtcttttgtatcataataacaaaaacataatttaagattgaagaaaaca 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20157946 ttatttgattagaattataaatctagtttatcaagttgtggttaatatttagtcttttgtatcataataacaaaaacataatttaagattgaagaaaaca 20158045  T
Q  191 cgcatagaggttgtaaaacatatgatgagtgcatttatgatttacctttgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20158046 cgcatagaggttgtaaaacatatgatgagtgcatttatgatttacctctgct 20158097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 20199624 - 20199373
Alignment:
Q  1 ataaatatcttataatatctgaattctcaaagtatcttaaattatttcttacttacaattagcttctgtannnnnnnnatat----------ttgcttct 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||          ||||||||    
T  20199624 ataaatatcttataatatctgaattctcaaagtatcttaaattatttcttacttacaattagcttctgtattttttttatatactctgtaatttgcttct 20199525  T
Q  91 ttatttgattagaattataaatctagtttatcaagttgtggttaatatttagtcttttgtatcataataacaaaaacataatttaagattgaagaaaaca 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20199524 ttatttgattagaattataaatctagtttatcaagttgtggttaatatttagtcttttgtatcataataacaaaaacataatttaagattgaagaaaaca 20199425  T
Q  191 cgcatagaggttgtaaaacatatgatgagtgcatttatgatttacctttgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20199424 cgcatagaggttgtaaaacatatgatgagtgcatttatgatttacctctgct 20199373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38226813 - 38226882
Alignment:
Q  1 ataaatatcttataatatctgaattctcaaagtatcttaaattatttcttacttacaattagcttctgta 70  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38226813 ataaatatcttaaaatatctaaattctcaaagtatcttaaattatttcttacttacaattagcttctgta 38226882  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 38226906 - 38226967
Alignment:
Q  81 atttgcttctttatttgattagaattataaatctagtttatcaagttgtggttaatatttag 142  Q
    ||||||||||||||||||||||||||||||||||||| || |||||   |||||||||||||    
T  38226906 atttgcttctttatttgattagaattataaatctagtataacaagtaaaggttaatatttag 38226967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 38227360 - 38227432
Alignment:
Q  167 cataatttaagattgaagaaaacacgcatagaggttgtaaaacatatgatgagtgcatttatgatttacctttgct 242  Q
    |||||||||| || |||||||||||  |||||||| |||||||||| ||||||||||| |||||||||||| ||||    
T  38227360 cataatttaa-atagaagaaaacac--atagaggtggtaaaacataagatgagtgcatctatgatttacctctgct 38227432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44284136 - 44283885
Alignment:
Q  1 ataaatatcttataatatctgaattctcaaagtatcttaaattatttcttacttacaattagcttctgtannnnnnnnatat----------ttgcttct 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||          ||||||||    
T  44284136 ataaatatcttataatatctgaattctcaaagtatcttaaattatttcttacttacaattagcttctgtattttttttatatactctgtaatttgcttct 44284037  T
Q  91 ttatttgattagaattataaatctagtttatcaagttgtggttaatatttagtcttttgtatcataataacaaaaacataatttaagattgaagaaaaca 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44284036 ttatttgattagaattataaatctagtttatcaagttgtggttaatatttagtcttttgtatcataataacaaaaacataatttaagattgaagaaaaca 44283937  T
Q  191 cgcatagaggttgtaaaacatatgatgagtgcatttatgatttacctttgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44283936 cgcatagaggttgtaaaacatatgatgagtgcatttatgatttacctctgct 44283885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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