View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_high_48 (Length: 235)
Name: NF18467_high_48
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_high_48 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34866415 - 34866635
Alignment:
| Q |
1 |
tgataccatttgataagtagtcgagagcctttgaagaaatctcccttaaagctagctgtcaagaaggaagaacctaacaactcaaatactacccgatgct |
100 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866415 |
tgataccatttgataagtagtcgagagcatttggagaaatctcccttaaagctagctgtcaagaaggaagaacctaacaactcaaatactacccgatgct |
34866514 |
T |
|
| Q |
101 |
agacttaggccctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866515 |
agacttaggccctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtt |
34866614 |
T |
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| Q |
201 |
tggaagagcttatttacaact |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34866615 |
tggaagagcttatttacaact |
34866635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 51857530 - 51857420
Alignment:
| Q |
111 |
cctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagct |
210 |
Q |
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||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| || |
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| T |
51857530 |
cctcccaaaatacccaagtccctgtcaatattttactcatctacttgcattaataaataagccacatataaatagtattaagggagtgtttggaagatct |
51857431 |
T |
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| Q |
211 |
tatttacaact |
221 |
Q |
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|| | |||||| |
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| T |
51857430 |
tactaacaact |
51857420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 51857638 - 51857575
Alignment:
| Q |
30 |
tttgaagaaatctc--ccttaaagctagctgtcaagaaggaagaacctaacaactcaaatacta |
91 |
Q |
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|||| ||||||||| ||| ||||||||||||||||||||||||||| | | ||| |||||||| |
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| T |
51857638 |
tttggagaaatctctgcctaaaagctagctgtcaagaaggaagaaccaagccacttaaatacta |
51857575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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