View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18467_low_12 (Length: 482)

Name: NF18467_low_12
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18467_low_12
NF18467_low_12
[»] chr8 (2 HSPs)
chr8 (1-252)||(33615748-33616006)
chr8 (295-359)||(2358604-2358668)
[»] chr3 (5 HSPs)
chr3 (259-476)||(55477848-55478065)
chr3 (258-476)||(41885430-41885648)
chr3 (269-476)||(92748-92955)
chr3 (282-359)||(46185787-46185864)
chr3 (288-349)||(46186985-46187047)
[»] chr7 (4 HSPs)
chr7 (261-476)||(20900443-20900658)
chr7 (292-341)||(40905745-40905794)
chr7 (386-444)||(48380194-48380249)
chr7 (287-349)||(24322303-24322365)
[»] chr2 (2 HSPs)
chr2 (261-473)||(27276671-27276883)
chr2 (258-322)||(16887503-16887567)
[»] scaffold0039 (2 HSPs)
scaffold0039 (283-359)||(90645-90721)
scaffold0039 (282-333)||(90974-91026)
[»] chr4 (5 HSPs)
chr4 (282-359)||(3220546-3220623)
chr4 (282-359)||(3221366-3221444)
chr4 (297-360)||(41952347-41952411)
chr4 (292-341)||(34956323-34956372)
chr4 (292-341)||(50709031-50709080)
[»] chr1 (2 HSPs)
chr1 (277-359)||(41465260-41465342)
chr1 (283-348)||(50164662-50164728)
[»] chr5 (2 HSPs)
chr5 (297-359)||(27645879-27645941)
chr5 (287-349)||(33283975-33284037)
[»] scaffold0041 (1 HSPs)
scaffold0041 (292-341)||(44224-44273)
[»] chr6 (1 HSPs)
chr6 (287-352)||(9427379-9427444)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 33615748 - 33616006
Alignment:
Q  1 ttgtcaacttaaagattagtttcataatggtgtaaagaatataaagttgtggagataccctaaagtgccgaaagctctaactaaagtgtgtcagcnnnnn 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  33615748 ttgtcaacttaaagattagcttcataatggtgtaaagaatataaagttgtggagataccctaaagtgccgaaagctctaactaaagtgtgtcagcaaaaa 33615847  T
Q  101 nnnngaaattgcattactgcattggtaaggtgagaaagtcttgttcatctttaattcttgct-------agatggatgtatgtattctatcgaaaaagaa 193  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  33615848 aaataaaattgcattactgcattggtaaggtgagaaagtcttgttcatctttaattcttgcttcaaatcagatggatgtatgtattctatcgaaaaagaa 33615947  T
Q  194 ggatatgtgtaatttttatttcaattttcaatacttaaacacttacaccttcacttttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33615948 ggatatgtgtaatttttatttcaattttcaatacttaaacacttacaccttcacttttt 33616006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 2358604 - 2358668
Alignment:
Q  295 ggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttccacacta 359  Q
    ||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| | |||||||    
T  2358604 ggaaagtttattttgacctttagatcaaatcaagaatacattcttataatactctcttcacacta 2358668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 8e-93; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 259 - 476
Target Start/End: Complemental strand, 55478065 - 55477848
Alignment:
Q  259 atttcacattggagaacctaaaacttttccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttccacact 358  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55478065 atttcacatgggagagtctaaaacttttccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctctccacact 55477966  T
Q  359 aaannnnnnnacacacttccacaccactgttctctctcctccgttcttcattttattctttcctatatttctccccatcacataattttgtaaacctgca 458  Q
    |||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55477965 aaatttttttacacacttccacaccactgttctctctcctcagttcttcattttattctttcctatatttctccccatcacataattttgtaaacctgca 55477866  T
Q  459 actcacctaccaccacct 476  Q
    ||||| ||||||||||||    
T  55477865 actcatctaccaccacct 55477848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 258 - 476
Target Start/End: Original strand, 41885430 - 41885648
Alignment:
Q  258 catttcacattggagaacctaaaacttttccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttccacac 357  Q
    |||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||    
T  41885430 catttcacatgggagagcctaaaactttcccaccatgggaaagtttatattgacttttagatcaaatcaagaacacatttttataataccctctccacac 41885529  T
Q  358 taaannnnnnnacacacttccacaccactgttctctctcctccgttcttcattttattctttcctatatttctccccatcacataattttgtaaacctgc 457  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41885530 taaatttttttacacacttccacaccactgttctctctcctccgttcttcattttattctttcctatatttctccccatcatataattttgtaaacctgc 41885629  T
Q  458 aactcacctaccaccacct 476  Q
    |||||||||||||||||||    
T  41885630 aactcacctaccaccacct 41885648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 269 - 476
Target Start/End: Complemental strand, 92955 - 92748
Alignment:
Q  269 ggagaacctaaaacttttccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttccacactaaannnnnnn 368  Q
    ||||| ||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||           
T  92955 ggagagcctaaaactttcccacgatgggaaagtttatattgacctttagatcaaatcaagaacacacttttacaatactctctccacactaaattttttt 92856  T
Q  369 acacacttccacaccactgttctctctcctccgttcttcattttattctttcctatatttctccccatcacataattttgtaaacctgcaactcacctac 468  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  92855 acacacttccacaccagtgttctttctcctccgttcttcattttattctttcctatatttctccccatcacataattttgtaaacctgcaactcacctac 92756  T
Q  469 caccacct 476  Q
    ||||||||    
T  92755 caccacct 92748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 46185787 - 46185864
Alignment:
Q  282 cttttccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttccacacta 359  Q
    |||| ||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  46185787 ctttcccatcataggaaagtttatttggacctttagatcaaatcaaaaacacatttttataatactctctccacacta 46185864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 46187047 - 46186985
Alignment:
Q  288 caccataggaaagtttatattgacc-tttagatcaaatcaagaacacatttttataatactct 349  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  46187047 caccataggaaagtttatattgaccctttagatcaaatcaagaacacattcttataatactct 46186985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 261 - 476
Target Start/End: Original strand, 20900443 - 20900658
Alignment:
Q  261 ttcacattggagaacctaaaacttttccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttccacactaa 360  Q
    ||||||| ||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20900443 ttcacatgggagagcctaaaactttcccatcatgggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctctccacactaa 20900542  T
Q  361 annnnnnnacacacttccacaccactgttctctctcctccgttcttcattttattctttcctatatttctccccatcacataattttgtaaacctgcaac 460  Q
    |       |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  20900543 atttttttacacacttccacaccagtgttctctctcctccgttcttcattttattcttttctatatttctccccatcacataattttataaacctgcaac 20900642  T
Q  461 tcacctaccaccacct 476  Q
    ||||||||||||||||    
T  20900643 tcacctaccaccacct 20900658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 40905794 - 40905745
Alignment:
Q  292 ataggaaagtttatattgacctttagatcaaatcaagaacacatttttat 341  Q
    ||||||||||| || |||||| ||||||||||| ||||||||||||||||    
T  40905794 ataggaaagttaattttgacccttagatcaaataaagaacacatttttat 40905745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 48380249 - 48380194
Alignment:
Q  386 tgttctctctcctccgttcttcattttattctttcctatatttctccccatcacataat 444  Q
    |||||||||||| |||||||| ||||||||   |||||||||| |||||||||||||||    
T  48380249 tgttctctctccaccgttcttgattttatt---tcctatatttttccccatcacataat 48380194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 24322365 - 24322303
Alignment:
Q  287 ccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactct 349  Q
    ||||||| |||||| || | |||||| ||||||||||| | |||||||||||||| |||||||    
T  24322365 ccaccatgggaaaggtttttttgaccgttagatcaaatgaggaacacatttttatcatactct 24322303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 261 - 473
Target Start/End: Original strand, 27276671 - 27276883
Alignment:
Q  261 ttcacattggagaacctaaaacttttccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttccacactaa 360  Q
    ||||||| ||||| ||||||||||| |||| || | |||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||    
T  27276671 ttcacatgggagagcctaaaactttcccacgatggaaaagtttatattgacctttagatcaaatcaagaacacataattataatactctctccacactaa 27276770  T
Q  361 annnnnnnacacacttccacaccactgttctctctcctccgttcttcattttattctttcctatatttctccccatcacataattttgtaaacctgcaac 460  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27276771 aaatttttacacacttccacaccactgttctctctcctccgttcttcattttattctttcctatatttctccccatcacataattttgtaaacctgcaac 27276870  T
Q  461 tcacctaccacca 473  Q
    |||||||||||||    
T  27276871 tcacctaccacca 27276883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 16887567 - 16887503
Alignment:
Q  258 catttcacattggagaacctaaaacttttccaccataggaaagtttatattgacctttagatcaa 322  Q
    |||||||||| ||| |  ||||||  |||||||||| ||||||||||| ||||||||| ||||||    
T  16887567 catttcacatgggaaaggctaaaatctttccaccatgggaaagtttattttgacctttggatcaa 16887503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 90645 - 90721
Alignment:
Q  283 ttttccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttccacacta 359  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||| |||||||||    
T  90645 ttttccaccataggaaagtttatttggacctttagatcaaatcaaaaacacattcttataatactctctccacacta 90721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 91026 - 90974
Alignment:
Q  282 cttttccaccataggaaagtttatattga-cctttagatcaaatcaagaacac 333  Q
    |||| ||||||||||||| |||||||||| |||||||||||||||||||||||    
T  91026 ctttcccaccataggaaaatttatattgatcctttagatcaaatcaagaacac 90974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 3220546 - 3220623
Alignment:
Q  282 cttttccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttccacacta 359  Q
    |||| ||| ||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  3220546 ctttcccatcataggaaagtttatttggacctttagatcaaatcaagaacacattcttataatactctctccacacta 3220623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 3221444 - 3221366
Alignment:
Q  282 cttttccaccataggaaagtttatattgacc-tttagatcaaatcaagaacacatttttataatactctttccacacta 359  Q
    |||| |||| || |||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  3221444 ctttcccacgatgggaaagtttatattgaccctttagatcaaatcaagaacacattcttatgatactctctcctcacta 3221366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 41952411 - 41952347
Alignment:
Q  297 aaagtttatattgacc-tttagatcaaatcaagaacacatttttataatactctttccacactaa 360  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||| ||||||    
T  41952411 aaagtttatattgaccctttagatcaaatcaaaaacacattcttataatactctctcctcactaa 41952347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 34956323 - 34956372
Alignment:
Q  292 ataggaaagtttatattgacctttagatcaaatcaagaacacatttttat 341  Q
    ||||||||||| || |||||| ||||||||| | ||||||||||||||||    
T  34956323 ataggaaagttaattttgacccttagatcaagtaaagaacacatttttat 34956372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 50709031 - 50709080
Alignment:
Q  292 ataggaaagtttatattgacctttagatcaaatcaagaacacatttttat 341  Q
    ||||||||||| || |||||| ||||||||| | ||||||||||||||||    
T  50709031 ataggaaagttaattttgacccttagatcaagtaaagaacacatttttat 50709080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 41465260 - 41465342
Alignment:
Q  277 taaaacttttccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttccacacta 359  Q
    |||||| || ||||||| ||||||||||| ||||| |||||||||||||| ||| ||||| |||||||||||| | |||||||    
T  41465260 taaaaccttcccaccatgggaaagtttattttgacatttagatcaaatcaggaatacattcttataatactctcttcacacta 41465342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 50164728 - 50164662
Alignment:
Q  283 ttttccaccataggaaagtttatatt-gacctttagatcaaatcaagaacacatttttataatactc 348  Q
    ||||||||||||||||||||  | || |||| ||||||||||||||||||||||  |||| ||||||    
T  50164728 ttttccaccataggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactc 50164662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 27645879 - 27645941
Alignment:
Q  297 aaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttccacacta 359  Q
    ||||||| | ||||||||||||| |||||||||||||||| |||||| ||||| | |||||||    
T  27645879 aaagtttgttttgacctttagataaaatcaagaacacattcttataacactctcttcacacta 27645941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 33284037 - 33283975
Alignment:
Q  287 ccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactct 349  Q
    ||||||| |||||| || | |||||| ||||||||||| | |||||||||||||| |||||||    
T  33284037 ccaccatgggaaaggtttttttgaccgttagatcaaatgaggaacacatttttatcatactct 33283975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 44224 - 44273
Alignment:
Q  292 ataggaaagtttatattgacctttagatcaaatcaagaacacatttttat 341  Q
    ||||||||||| || |||||| ||||||||||| ||||||||||||||||    
T  44224 ataggaaagttaattttgacccttagatcaaataaagaacacatttttat 44273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 9427379 - 9427444
Alignment:
Q  287 ccaccataggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctttc 352  Q
    ||||||| |||||| || | |||||| ||||||||||| | ||||||||||| || ||||||||||    
T  9427379 ccaccatgggaaaggtttttttgaccgttagatcaaatgaggaacacattttaatcatactctttc 9427444  T

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