View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_14 (Length: 478)
Name: NF18467_low_14
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 114 - 462
Target Start/End: Original strand, 16555823 - 16556171
Alignment:
| Q |
114 |
gagagaatttacaaaacgattatgattgattgatattgtaaacaaattttacactcttagttcatatcaaatccttttgttttttagaatcttttgttca |
213 |
Q |
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| T |
16555823 |
gagagaatttacaaaacgattatgattgattgatattgtaaacaaattttacactcttagttcatatcaaatccttttgttttttagaatcttttgttca |
16555922 |
T |
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| Q |
214 |
ttttatttgctaaactttgttgcaatcaaggttgatggaaatgcttaacacattgaattggtagagaatgttagaacctgtaaattaaatgattccatga |
313 |
Q |
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| T |
16555923 |
ttttatttgctaaactttgttgcaatcaaggttgatggaaatgcttaacgcattgaattggtagagaatgttagaacctgtaaattaaatgattccatga |
16556022 |
T |
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| Q |
314 |
ctgtaaattggagctctagttcgtatgtggtcattaaaatcgcatgtcatgtttccaatatattcagttcataagtatttgctccatgtagctgacaatc |
413 |
Q |
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| T |
16556023 |
ctgaaaattggagctctagttcgtatgtggtcattaaaatcgcatgtcatgtttccaatatattcagttcataagtatttgctccatgtagctgacaatc |
16556122 |
T |
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| Q |
414 |
agcttctctcaatttcacattaataatcttgagttgagttcgaactttg |
462 |
Q |
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| T |
16556123 |
agcttctctcaatttcacattaataatcttgagttgagttcgaactttg |
16556171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 30848330 - 30848420
Alignment:
| Q |
9 |
gtgagatgaagggaatgtgtcaacttatataatacatagtgcttcgaaaagatatcaaaatgtgtaataaaatttatatgacaactattga |
99 |
Q |
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| T |
30848330 |
gtgatatgatgggaatgtgtcaacttatataatacatagtgcttcgaaaagatatcaaaatgtgtaataaaatttatatgacaactattga |
30848420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 30841935 - 30842023
Alignment:
| Q |
9 |
gtgagatgaagggaatgtgtcaacttatataatacatagtgcttcgaaaagatatcaaaatgtgtaataaaatttatatgacaactattga |
99 |
Q |
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| T |
30841935 |
gtgatatgagggaaatgtgtcaacttatataatacatggtgcttcaaaaagata--aaaatgtgcagtaaaatttatatgaggactattga |
30842023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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