View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_17 (Length: 446)
Name: NF18467_low_17
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 33176936 - 33177347
Alignment:
| Q |
18 |
atgaaagaaacc-atatcttgaatccagaaaaaactaaatccaatatttttaaaccaaaaattgcaagagaaaattcgtgaagagcccatggtggtgcag |
116 |
Q |
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|||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
33176936 |
atgaaagaaacccatatcttgaacccagaaacaactaaatccaatatttttaaaccaaaaattgcaagagaaaattcgtgaagagcccatggcggtgccg |
33177035 |
T |
|
| Q |
117 |
aataatagagtcctaaaaacaagctcaagggaaagaggtccgcagaggctttaaataacaaataaagtttactagaggatcacaacaatggaaaaacact |
216 |
Q |
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|||||||||||||| ||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33177036 |
aataatagagtcctgaaatcaagctcaagggaacgagatccgccaaggctttaaataacaaataaagtttactagaggatcacaacaatggaaaaacact |
33177135 |
T |
|
| Q |
217 |
ccgatcagaactccttggatgaaatagtagtgagtagtcaataggaa-cccttggtgaacgaccccgagaggtgtttagaggtggagctgcgctgataag |
315 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| | ||| |||||||| |
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| T |
33177136 |
ccgattagaactccttggatgaaatagtagtgagtagtcgataggaaccccttggtgaacgaccccgagaggtgtttaaaggtggtgttgcactgataag |
33177235 |
T |
|
| Q |
316 |
actgcacaccgccatttttaatgaggaaaggatgaaaggttgagcttttgtcgcgcggctgagtatgaagagagagaacataggatacatgttcttaatc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33177236 |
actgcacaccgccatttttaatgaggaaaggatgaaaggttgagcttttgtcgcgcggctgagtatgaagagagagaacataggatacatgttcttaatc |
33177335 |
T |
|
| Q |
416 |
aa-gtattcata |
426 |
Q |
| |
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|| ||||||||| |
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| T |
33177336 |
aacgtattcata |
33177347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 132 - 332
Target Start/End: Original strand, 23356790 - 23356992
Alignment:
| Q |
132 |
aaaacaagctcaagggaaagaggtccgcagaggctttaaataacaaataaagtttactagaggatcacaacaatg-gaaaaacactccgatcagaactcc |
230 |
Q |
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|||||||||||||| ||| |||| |||| ||||| ||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||| || || |
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| T |
23356790 |
aaaacaagctcaagtgaacgaggaccgcgaaggctctaaatcacaaataaagtttactagaggaccacaacaaggacaaaaacactccgatcagtacccc |
23356889 |
T |
|
| Q |
231 |
ttggatgaaatagtagtgagtagtcaataggaac-ccttggtgaacgaccccgagaggtgtttagaggtggagctgcgctgataagactgcacaccgcca |
329 |
Q |
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|||||||||||||||||||| |||| || ||||| |||||||||| |||| ||||||||||||| ||| | |||||||||||| ||||||||| ||| |
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| T |
23356890 |
ttggatgaaatagtagtgagaagtctattggaactccttggtgaatgacctcgagaggtgtttaagggtaatgttgcgctgataagcctgcacaccacca |
23356989 |
T |
|
| Q |
330 |
ttt |
332 |
Q |
| |
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||| |
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|
| T |
23356990 |
ttt |
23356992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 23356708 - 23356753
Alignment:
| Q |
32 |
atcttgaatccagaaaaaactaaatccaatatttttaaaccaaaaa |
77 |
Q |
| |
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|||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
23356708 |
atcttgaatctagaaacaaccaaatccaatatttttaaaccaaaaa |
23356753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Original strand, 23357200 - 23357239
Alignment:
| Q |
375 |
tgagtatgaagagagagaacataggatacatgttcttaat |
414 |
Q |
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||||||||||||||||||| | |||||||||||||||||| |
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| T |
23357200 |
tgagtatgaagagagagaagagaggatacatgttcttaat |
23357239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 426
Target Start/End: Complemental strand, 23340747 - 23340657
Alignment:
| Q |
335 |
aatgaggaaaggatgaaaggttgagcttttgtcgcgcggctgagtatgaagagagagaacataggatacatgttcttaatc-aagtattcata |
426 |
Q |
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|||||||||| |||||| || |||||||| || | ||||||||||| |||||||||| | | |||||||||||||| || ||||||||||| |
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| T |
23340747 |
aatgaggaaatgatgaagggatgagctttggtggatcggctgagtat--agagagagaagagatgatacatgttcttagtcaaagtattcata |
23340657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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