View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18467_low_18 (Length: 443)

Name: NF18467_low_18
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18467_low_18
NF18467_low_18
[»] chr5 (6 HSPs)
chr5 (9-187)||(35803110-35803291)
chr5 (196-424)||(35803276-35803489)
chr5 (114-427)||(35851686-35851984)
chr5 (9-119)||(35854083-35854202)
chr5 (10-147)||(10520559-10520699)
chr5 (346-427)||(10520365-10520445)
[»] chr4 (5 HSPs)
chr4 (9-87)||(45881898-45881976)
chr4 (107-150)||(45862515-45862558)
chr4 (27-150)||(56209299-56209426)
chr4 (22-152)||(47292728-47292866)
chr4 (116-150)||(45882084-45882118)
[»] chr2 (2 HSPs)
chr2 (9-87)||(24351105-24351183)
chr2 (115-165)||(24350949-24350999)
[»] chr8 (1 HSPs)
chr8 (27-165)||(7962464-7962611)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 35803110 - 35803291
Alignment:
Q  9 catcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagttttgaacttc---tcttttctt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  35803110 catcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagttttgaacttcttctcttttctt 35803209  T
Q  106 ccctcaagaagaagagactttatccagccaatttgaatagatattgtgtagcaatgcagtgtgtgcctcactactatctcgt 187  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35803210 ccctctagaagaagagactttatccagccaatttgaatagatattgtgtagcaatgcagtgtgtgcctcactactatctcgt 35803291  T

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Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 196 - 424
Target Start/End: Original strand, 35803276 - 35803489
Alignment:
Q  196 ctcaccactatctcgtgcctcactactatcttcagcatagtgataaaaattgatataaggattgtcatacggactattgtcatacagaccatcggcataa 295  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||               ||||||||||||| | |||||    
T  35803276 ctcactactatctcgtgcctcactactatcttcagcatagcgataaaaattgatataaggattg---------------tcatacagaccattgtcataa 35803360  T
Q  296 cctctatcaaaactgaggtcgtcgatggagaatccaacatgaccattgggaggtgcaaaaatctcatcacatgcgcaggcaaaggtaatattcttttggt 395  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35803361 cctctatcaaaactgaggtcgtcgatggagaattcaacatgaccattgggaggtgcaaaaatctcatcacatgcgcaggcaaaggtaatattcttttggt 35803460  T
Q  396 tgaattgaagggacataagccacaaccgt 424  Q
    |||||||||||||||||||||||||||||    
T  35803461 tgaattgaagggacataagccacaaccgt 35803489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 114 - 427
Target Start/End: Complemental strand, 35851984 - 35851686
Alignment:
Q  114 aagaagagactttatccagccaatttgaatagatattgtgtagcaatgcagtgtgtgcctcactactatctcgtagtcgtgtctcaccactatctcgt-- 211  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||| | ||||||| | |||||| ||      | ||||| ||||||||||      
T  35851984 aagaagagactttaaccagccaatttgaatagatattatgtagcaatgcagtttctgcctcagttctatcttgt------gcctcactactatctcgtcg 35851891  T
Q  212 -gcctcactactatcttcagcatagtgataaaaattgatataaggattgtcatacggactattgtcatacagaccatcggcataacctctatcaaaactg 310  Q
     |||||||||||||||||| |||||||||||  ||||  |||| ||||||||||| ||  |||||||||||||||            |||||||||||||    
T  35851890 tgcctcactactatcttcaacatagtgataaggattgccataaagattgtcatacagatcattgtcatacagacc------------tctatcaaaactg 35851803  T
Q  311 aggtcgtcgatggagaatccaacatgaccattgggaggtgcaaaaatctcatcacatgcgcaggcaaaggtaatattcttttggttgaattgaagggaca 410  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  35851802 aggtcgtcgatgttgaatccaacatgaccattgagaggtgcaaaattctcatcacatgcgcaggcaaaggtaatattcttttggttgaatcgaaaggaca 35851703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 35854202 - 35854083
Alignment:
Q  9 catcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgata------aacaccttcatttatgaagttttgaa---cttctct 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||| |||||   |||||||    
T  35854202 catcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacagaaacaccttcatttatgaagtcttgaacttcttctct 35854103  T
Q  100 tttcttccctcaagaagaag 119  Q
    ||||||||||  ||||||||    
T  35854102 tttcttccctatagaagaag 35854083  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 10520699 - 10520559
Alignment:
Q  10 atcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagttttgaa---cttctcttttcttc 106  Q
    |||||||| |||||| ||||||||||||||||| | ||| |||||||||| | |||| |||||||||||||||||||||| ||   |||||||| |||||    
T  10520699 atcatcatgcactaaacttgatatgaaaccctcattttttagtttatctacttgatagacaccttcatttatgaagttttcaacttcttctcttctcttc 10520600  T
Q  107 cctcaagaagaagagactttatccagccaatttgaatagat 147  Q
    |||| |  | ||||| |||| ||||||||||||||| ||||    
T  10520599 cctctaagataagagtctttctccagccaatttgaacagat 10520559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 427
Target Start/End: Complemental strand, 10520445 - 10520365
Alignment:
Q  346 aggtgcaaaaatctcatcacatgcgcaggcaaaggtaatattcttttggttgaattgaagggacataagccacaaccgtttt 427  Q
    ||||||||||||||||||||| || || || | ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  10520445 aggtgcaaaaatctcatcacaagcacaagcga-ggtaatattctgttggttgaattgaagggacataagccacaaccatttt 10520365  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 45881898 - 45881976
Alignment:
Q  9 catcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagtt 87  Q
    |||||||||| | || ||||| |||||||||||||||||||||| | |||| | |||| ||||||||||||||||||||    
T  45881898 catcatcatagagtatgcttgttatgaaaccctcttctttcagtctgtctacttgatagacaccttcatttatgaagtt 45881976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 45862515 - 45862558
Alignment:
Q  107 cctcaagaagaagagactttatccagccaatttgaatagatatt 150  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  45862515 cctctagaagaagagactttatccagccaatttgaatagatatt 45862558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 56209299 - 56209426
Alignment:
Q  27 ttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagttttgaac----ttctcttttcttccctcaagaagaagaga 122  Q
    ||||||||||||||||||||| |||| ||| |  | |||| ||||| ||||||||||| || | ||     |||| ||||||| ||||  | ||||||||    
T  56209299 ttgatatgaaaccctcttcttccagtctatttgcttgatagacaccatcatttatgaaattgtcaatatctttctattttctttcctcttgcagaagaga 56209398  T
Q  123 ctttatccagccaatttgaatagatatt 150  Q
    ||||||| ||||||||||||||||||||    
T  56209399 ctttatcgagccaatttgaatagatatt 56209426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 47292866 - 47292728
Alignment:
Q  22 taagcttgatatgaaaccctcttctttcagtttatct--aatcgataaacaccttc---atttatgaagttttgaa---cttctcttttcttccctcaag 113  Q
    |||| |||||||||||||||||||||||||||| | |  | | |||| ||| | ||   |||||||||||||| ||   |||||||| |||| | |  ||    
T  47292866 taagtttgatatgaaaccctcttctttcagtttgtgtgtacttgatagacatcatctccatttatgaagttttcaatatcttctcttctctttcttgtag 47292767  T
Q  114 aagaagagactttatccagccaatttgaatagatattgt 152  Q
    ||||||| || |||||||||||||||||||| |||||||    
T  47292766 aagaagataccttatccagccaatttgaataaatattgt 47292728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 45882084 - 45882118
Alignment:
Q  116 gaagagactttatccagccaatttgaatagatatt 150  Q
    ||||| |||||||||||||||||||||||||||||    
T  45882084 gaagatactttatccagccaatttgaatagatatt 45882118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 24351183 - 24351105
Alignment:
Q  9 catcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagtt 87  Q
    |||||||||||| |||  ||||||| |  |||||||||||||| ||||| | | |||||||||||||||||||||||||    
T  24351183 catcatcatacattaaatttgatataaggccctcttctttcagcttatcaacttgataaacaccttcatttatgaagtt 24351105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 24350999 - 24350949
Alignment:
Q  115 agaagagactttatccagccaatttgaatagatattgtgtagcaatgcagt 165  Q
    ||||||||||||||||||||| |||| ||||||||| | ||| ||||||||    
T  24350999 agaagagactttatccagccagtttgtatagatattatctagtaatgcagt 24350949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 7962464 - 7962611
Alignment:
Q  27 ttgatatgaaaccctcttctttcagtttatctaatc--gataaaca----ccttcatttatgaagttttgaa---cttctcttttcttccctcaagaaga 117  Q
    |||||| ||||||||||||||||||||| | || ||  |||||||     |||||||||||||| |||| ||   ||||| ||||||| ||   ||||||    
T  7962464 ttgatacgaaaccctcttctttcagtttgtatactccagataaaccatctccttcatttatgaaattttcaatatcttcttttttctttccaatagaaga 7962563  T
Q  118 agagactttatccagccaatttgaatagatattgtgtagcaatgcagt 165  Q
    |||||| |||||||||||||||||||| ||| |||   ||||||||||    
T  7962564 agagaccttatccagccaatttgaataaatactgtcctgcaatgcagt 7962611  T

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